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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:46.8 nTPM
FANTOM5:123.9 Scaled Tags Per Million
Pig:60.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA008019Antibody HPA060804
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 46.8
Samples: 246

Max nTPM: 151.2
Min nTPM: 13.7
Std nTPM: 20.1
Median nTPM: 43.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 151.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 122.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 108.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 106.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 102.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 98.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 96.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 95.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 93.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 92.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 90.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 88.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 87.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 83.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 82.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 81.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 80.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 78.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 76.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 75.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 74.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 73.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 72.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 72.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 70.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 70.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 69.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 68.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 67.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 66.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 66.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 66.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 65.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 65.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 65.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 64.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 64.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 64.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 63.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 63.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 63.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 63.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 62.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 62.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 62.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 61.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 60.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 60.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 59.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 59.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 59.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 58.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 58.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 58.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 57.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 57.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 57.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 57.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 57.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 57.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 57.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 56.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 56.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 56.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 56.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 56.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 56.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 55.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 55.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 55.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 55.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 54.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 54.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 53.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 53.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 53.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 53.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 52.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 52.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 51.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 51.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 51.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 51.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 50.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 50.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 50.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 50.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 50.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 50.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 49.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 49.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 49.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 48.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 48.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 48.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 48.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 48.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 48.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 48.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 48.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 47.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 47.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 47.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 47.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 47.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 46.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 46.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 46.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 46.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 46.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 45.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 45.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 45.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 45.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 45.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 45.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 45.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 45.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 44.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 44.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 44.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 43.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 43.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 43.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 43.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 43.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 43.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 43.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 43.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 43.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 43.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 43.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 42.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 42.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 42.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 42.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 41.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 41.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 41.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 41.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 41.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 41.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 41.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 40.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 40.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 40.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 40.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 40.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 39.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 39.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 39.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 39.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 39.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 38.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 38.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 38.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 38.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 38.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 38.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 37.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 37.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 37.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 36.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 36.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 36.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 35.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 35.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 35.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 35.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 34.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 34.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 34.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 34.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 34.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 33.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 33.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 33.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 33.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 33.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 33.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 33.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 32.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 32.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 32.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 32.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 32.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 32.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 32.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 32.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 32.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 31.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 31.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 31.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 31.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 30.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 30.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 30.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 30.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 29.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 29.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 29.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 29.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 29.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 29.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 28.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 28.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 28.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 28.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 28.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 27.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 27.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 26.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 26.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 26.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 26.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 26.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 25.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 25.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 25.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 25.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 24.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 24.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 24.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 23.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 23.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 23.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 23.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 23.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 23.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 22.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 22.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 21.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 21.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 21.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 20.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 20.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 20.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 20.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 19.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 19.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 18.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 18.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 17.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 16.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 16.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 13.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

123.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 123.9
FF:10164-103B2 76 years, female 123.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.5
Pig sample Sample description nTPM
Caudate
nTPM: 60.5
Samples: 4

Max nTPM: 76.3
Min nTPM: 48.4
Sample A Female 76.3
Sample B Female 48.4
Sample C Male 60.8
Sample D Male 56.6

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