We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
UGP2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • UGP2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:98.5 nTPM
FANTOM5:114.2 Scaled Tags Per Million
Pig:32.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA034696Antibody HPA034697Antibody HPA064836
Glial cells Not detectedLowNot detected
Neuronal cells Not detectedMediumNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 98.5
Samples: 246

Max nTPM: 238.1
Min nTPM: 51.4
Std nTPM: 27.1
Median nTPM: 94.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 238.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 194.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 193.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 181.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 180.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 168.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 159.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 153.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 152.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 151.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 150.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 150.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 146.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 141.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 139.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 137.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 136.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 135.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 134.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 133.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 130.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 129.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 129.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 129.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 129.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 128.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 128.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 128.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 128.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 127.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 127.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 126.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 126.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 125.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 125.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 124.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 124.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 123.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 123.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 122.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 122.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 122.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 121.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 121.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 120.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 119.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 119.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 119.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 119.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 118.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 118.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 118.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 117.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 117.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 117.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 116.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 116.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 116.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 115.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 114.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 114.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 114.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 113.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 112.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 111.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 111.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 111.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 111.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 111.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 111.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 110.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 110.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 110.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 109.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 109.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 109.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 109.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 108.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 108.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 108.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 107.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 107.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 106.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 106.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 105.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 105.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 105.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 105.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 104.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 104.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 104.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 103.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 102.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 102.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 101.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 101.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 100.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 100.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 100.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 100.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 99.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 99.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 99.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 99.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 98.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 98.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 98.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 98.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 97.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 97.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 96.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 96.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 96.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 95.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 95.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 95.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 95.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 95.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 95.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 95.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 95.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 94.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 94.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 94.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 94.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 94.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 94.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 94.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 94.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 94.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 94.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 93.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 93.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 92.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 92.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 92.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 92.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 92.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 91.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 91.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 91.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 91.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 91.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 90.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 89.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 89.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 89.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 88.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 88.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 88.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 88.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 88.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 87.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 87.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 87.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 87.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 87.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 87.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 85.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 84.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 84.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 84.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 84.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 84.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 83.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 83.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 83.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 83.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 83.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 83.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 83.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 83.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 82.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 81.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 81.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 81.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 81.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 80.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 80.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 80.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 80.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 80.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 80.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 80.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 80.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 79.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 79.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 78.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 78.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 78.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 78.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 78.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 77.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 77.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 77.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 76.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 76.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 76.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 76.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 75.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 75.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 75.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 74.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 74.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 73.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 73.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 72.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 72.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 72.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 71.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 70.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 70.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 70.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 70.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 69.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 69.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 69.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 69.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 68.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 68.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 68.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 67.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 67.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 66.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 66.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 66.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 65.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 65.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 65.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 64.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 64.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 62.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 62.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 62.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 62.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 61.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 60.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 60.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 59.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 56.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 56.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 56.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 56.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 55.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 53.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 51.4
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

114.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 114.2
FF:10164-103B2 76 years, female 114.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.1
Pig sample Sample description nTPM
Caudate
nTPM: 32.2
Samples: 4

Max nTPM: 36.0
Min nTPM: 29.1
Sample A Female 33.4
Sample B Female 29.1
Sample C Male 36.0
Sample D Male 30.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org