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EMX2
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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

75.990
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:29.8 nTPM
GTEx:16.7 nTPM
FANTOM5:112.9 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA065294
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA003497
Hippocampal formation mean intensity 75.990
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 35.630
Molecular layer of the dentate gyrus 42.019
Granular dentate gyrus 26.611
CA1 - oriens layer 54.747
CA1 - pyramidal layer 55.210
CA1 - radiatum layer 33.227
CA2 - oriens layer 37.552
CA2 - pyramidal layer 30.300
CA2 - radiatum layer 28.238
CA3 - oriens layer 31.565
CA3 - pyramidal layer 30.386
CA3 - radiatum layer 26.890
Stratum lucidum 31.249
Lacunosum moleculare 75.990
Subiculum 5.452

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.8
Sample id Sample description nTPM
Hippocampus
nTPM: 29.8
2148 Female, age 91, left hemisphere 35.6
2529 Female, age 94, left hemisphere 33.7
1911 Female, age 85, right hemisphere 32.8
1855 Male, age 76, left hemisphere 27.7
2621 Female, age 67, right hemisphere 26.2
1898 Male, age 80, left hemisphere 23.0

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.7
Samples: 197

Max nTPM: 48.1
Min nTPM: 4.1
Std nTPM: 8.2
Median nTPM: 15.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 48.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 47.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 43.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 40.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 39.2
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 37.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 36.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 36.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 35.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 35.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 35.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 34.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 33.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 33.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 31.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 28.7
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 28.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 28.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 28.2
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 26.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 26.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 25.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 24.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 24.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 24.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 24.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 24.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 23.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 23.5
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 23.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 23.1
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 23.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 23.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 22.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 22.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 22.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 22.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 22.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 22.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 22.1
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 22.1
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 22.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 21.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 21.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 21.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 21.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 21.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 21.0
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 20.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 20.5
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 20.5
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 20.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 20.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 20.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 19.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 19.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 19.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 19.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 19.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 19.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 19.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 18.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 18.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 18.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 18.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 18.3
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 18.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 18.1
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 18.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 18.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 17.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 17.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 17.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 17.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 17.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 17.6
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 17.6
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 17.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 17.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 17.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 17.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 17.1
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 17.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 16.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 16.8
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 16.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 16.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 16.4
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 16.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 16.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 15.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 15.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 15.7
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 15.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 15.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 15.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 15.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 15.1
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 15.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 15.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 15.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 15.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 14.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 14.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 14.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 14.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 14.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 14.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 14.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 14.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 14.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 14.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 13.9
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 13.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 13.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 13.4
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 13.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 13.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 13.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 13.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 13.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 12.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 12.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 12.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 12.7
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 12.7
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 12.6
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 12.6
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 12.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 12.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 12.4
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 12.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 12.0
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 11.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 11.6
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 11.6
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 11.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 11.5
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 11.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 11.4
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 11.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 11.3
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 11.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 11.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 11.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 10.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 10.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 10.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 10.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 10.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 10.3
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 10.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 10.2
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 10.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 10.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 10.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 9.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 9.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 9.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 9.6
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 9.5
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 9.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 9.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 9.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 9.1
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 9.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 9.0
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 9.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 9.0
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 8.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 8.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 8.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 8.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 8.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 8.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 8.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 8.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 8.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 8.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 7.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 7.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 7.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 7.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 7.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 7.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 7.1
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 6.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 6.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 6.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 6.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 5.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 5.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 5.3
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 4.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 4.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 4.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 4.1
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

112.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 112.9
FF:10169-103B7 60 years, female 116.3
FF:10153-102I9 76 years, female 109.5

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