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DCLK2
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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

41.240
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:125.4 nTPM
GTEx:37.1 nTPM
FANTOM5:142.0 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA015770
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA015770
Hippocampal formation mean intensity 41.240
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 6.703
Molecular layer of the dentate gyrus 7.661
Granular dentate gyrus 18.766
CA1 - oriens layer 1.524
CA1 - pyramidal layer 15.452
CA1 - radiatum layer 10.314
CA2 - oriens layer 16.891
CA2 - pyramidal layer 41.240
CA2 - radiatum layer 18.795
CA3 - oriens layer 23.451
CA3 - pyramidal layer 24.661
CA3 - radiatum layer 25.194
Stratum lucidum 19.880
Lacunosum moleculare 1.463
Subiculum 12.807

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.4
Sample id Sample description nTPM
Hippocampus
nTPM: 125.4
1898 Male, age 80, left hemisphere 134.5
2148 Female, age 91, left hemisphere 133.3
1911 Female, age 85, right hemisphere 127.6
2529 Female, age 94, left hemisphere 125.3
1855 Male, age 76, left hemisphere 121.6
2621 Female, age 67, right hemisphere 109.8

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 37.1
Samples: 197

Max nTPM: 71.5
Min nTPM: 7.4
Std nTPM: 12.6
Median nTPM: 36.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 71.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 66.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 64.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 63.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 63.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 62.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 61.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 60.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 60.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 59.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 56.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 56.5
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 56.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 55.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 55.1
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 54.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 54.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 54.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 54.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 53.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 53.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 53.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 53.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 53.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 53.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 52.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 52.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 51.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 51.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 51.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 50.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 50.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 50.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 50.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 50.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 49.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 49.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 49.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 49.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 49.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 48.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 48.7
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 48.6
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 48.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 47.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 47.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 47.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 46.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 46.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 45.5
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 45.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 45.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 44.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 44.7
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 44.7
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 44.6
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 44.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 44.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 44.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 44.1
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 44.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 44.0
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 43.9
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 43.9
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 43.6
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 43.4
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 42.7
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 42.6
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 42.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 42.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 41.6
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 41.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 41.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 40.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 40.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 40.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 40.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 40.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 40.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 40.2
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 40.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 40.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 39.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 39.8
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 39.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 39.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 38.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 38.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 38.2
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 38.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 38.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 38.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 37.8
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 37.7
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 37.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 37.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 36.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 36.7
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 36.5
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 36.2
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 36.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 36.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 35.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 35.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 35.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 34.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 34.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 34.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 34.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 34.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 34.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 34.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 34.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 34.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 33.9
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 33.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 33.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 32.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 32.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 32.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 32.1
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 31.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 31.8
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 31.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 31.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 31.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 31.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 30.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 30.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 30.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 30.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 30.5
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 30.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 30.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 29.9
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 29.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 29.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 29.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 29.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 29.2
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 29.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 28.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 28.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 28.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 27.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 27.9
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 27.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 27.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 27.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 27.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 27.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 26.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 26.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 26.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 26.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 26.4
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 26.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 26.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 25.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 25.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 25.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 24.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 24.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 24.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 24.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 24.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 23.8
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 23.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 22.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 22.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 22.4
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 22.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 22.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 21.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 21.6
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 21.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 21.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 21.1
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 20.9
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 20.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 19.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 18.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 18.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 18.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 18.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 18.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 17.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 17.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 17.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 16.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 16.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 15.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 15.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 14.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 9.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 9.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 7.4
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

142.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 142.0
FF:10153-102I9 76 years, female 143.8
FF:10169-103B7 60 years, female 140.2

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