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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:60.4 nTPM
FANTOM5:141.4 Scaled Tags Per Million
Pig:148.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA061138Antibody CAB046032
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 60.4
Samples: 246

Max nTPM: 199.1
Min nTPM: 3.0
Std nTPM: 44.0
Median nTPM: 52.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 199.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 186.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 182.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 176.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 176.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 164.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 155.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 150.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 149.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 147.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 147.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 145.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 141.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 140.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 138.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 138.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 137.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 136.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 135.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 131.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 130.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 129.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 128.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 125.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 124.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 122.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 120.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 120.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 117.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 117.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 117.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 116.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 115.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 115.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 112.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 109.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 105.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 105.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 102.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 102.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 102.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 101.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 99.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 99.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 98.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 97.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 97.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 97.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 96.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 96.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 95.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 95.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 93.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 93.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 92.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 91.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 91.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 91.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 90.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 90.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 90.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 90.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 89.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 89.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 88.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 88.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 88.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 88.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 88.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 87.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 87.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 85.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 83.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 83.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 81.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 81.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 81.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 81.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 80.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 80.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 79.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 78.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 77.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 76.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 76.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 74.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 74.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 73.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 73.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 72.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 72.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 72.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 71.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 71.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 71.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 70.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 70.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 69.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 68.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 68.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 67.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 66.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 66.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 65.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 65.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 63.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 62.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 62.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 62.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 61.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 61.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 61.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 60.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 59.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 58.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 57.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 57.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 56.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 55.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 55.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 54.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 53.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 52.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 52.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 52.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 51.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 50.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 48.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 47.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 46.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 46.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 46.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 46.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 45.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 45.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 44.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 44.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 44.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 44.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 43.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 43.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 43.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 42.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 42.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 42.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 41.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 41.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 41.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 39.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 38.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 38.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 38.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 38.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 36.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 36.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 35.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 34.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 33.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 33.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 33.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 32.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 32.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 31.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 30.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 30.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 29.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 29.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 29.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 29.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 29.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 28.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 28.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 28.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 27.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 27.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 26.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 26.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 25.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 24.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 24.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 24.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 24.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 23.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 22.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 22.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 22.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 21.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 21.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 19.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 19.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 19.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 19.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 19.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 18.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 18.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 17.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 16.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 16.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 16.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 16.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 14.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 14.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 14.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 14.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 13.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 13.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 13.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 13.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 13.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 12.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 12.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 12.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 11.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 11.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 10.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 10.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 10.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 10.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 10.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 9.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 9.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 9.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 9.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 9.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 8.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 7.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 7.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 7.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 7.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 7.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 6.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 6.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 6.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 6.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 5.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 5.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 5.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 5.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 5.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 4.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 4.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 4.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 4.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 3.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 3.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 3.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

141.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 141.4
FF:10164-103B2 76 years, female 141.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.4
Pig sample Sample description nTPM
Caudate
nTPM: 148.5
Samples: 4

Max nTPM: 168.0
Min nTPM: 135.7
Sample A Female 135.7
Sample B Female 153.3
Sample C Male 168.0
Sample D Male 136.8

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