PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Medulla oblongatai 		99.488
Mouse brain, Intensity
Ponsi 		66.214
RNA expressioni
HPA Brain:693.2 nTPM
FANTOM5:679.5 Scaled Tags Per Million
Pig:919.8 nTPM
Mouse:260.8 nTPM
Allen mouse:5.1 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei , antibody CAB005079
Medulla oblongata mean intensity 99.488
intensityi
FRONT BACK
Nucleus of the solitary tract 40.773
Raphe magnus nucleus 38.722
Cochlear nucleus 32.829
Lateral paragigantocellular nucleus 34.700
Raphe pallidus nucleus 71.357
Facial nucleus 37.096
Hypoglossal nucleus 47.190
Ambiguus nucleus 30.793
External cuneate nucleus 47.225
Inferior olivary nucleus 44.887
Raphe obscures nucleus 30.084
Dorsal motor nucleus of vagus 99.488
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 25.077
Parabrachial nucleus 66.214
Principle sensory trigeminal nucleus 37.887
Locus coeruleus 39.258
Pontine nucleus 34.922
Vestibular nucleus 28.961
Pontine reticular nucleus, oral 19.950
Lateral lemniscus 15.124
Superior paraolivary nucleus 16.565

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 693.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 302.3
2301 Female, age 85, both hemispheres 370.3
2090 Male, age 80, both hemispheres 331.4
1984 Male, age 76, both hemispheres 315.3
2188 Female, age 91, both hemispheres 192.2
Area postrema
nTPM: 495.1
2799 Male, age 61, both hemispheres 655.5
2306 Male, age 80, both hemispheres 501.0
2054 Male, age 76, both hemispheres 328.8
Dorsal cochlear nucleus
nTPM: 392.2
2370 Male, age 61, both hemispheres 586.3
2058 Male, age 76, both hemispheres 400.4
2378 Male, age 80, both hemispheres 357.3
2802 Male, age 74, right hemisphere 328.3
2187 Female, age 91, both hemispheres 288.6
Dorsal medullary reticular nucleus
nTPM: 292.4
2040 Female, age 85, both hemispheres 356.0
2373 Male, age 61, both hemispheres 298.7
2088 Male, age 76, both hemispheres 222.6
Dorsal motor vagal complex
nTPM: 372.0
2797 Male, age 61, both hemispheres 653.0
2000 Male, age 74, unknown 447.4
2813 Female, age 72, unknown 429.6
2185 Male, age 76, both hemispheres 400.7
2844 Male, age 55, unknown 384.8
2133 Female, age 91, both hemispheres 239.5
2643 Male, age 74, both hemispheres 226.8
2807 Female, age 85, both hemispheres 194.3
Dorsal tegmental nucleus
nTPM: 401.1
1936 Male, age 76, left hemisphere 479.5
2083 Male, age 80, both hemispheres 439.7
2326 Male, age 74, both hemispheres 399.6
2358 Male, age 61, both hemispheres 285.7
Dorsolateral tegmental area
nTPM: 445.5
2360 Male, age 74, both hemispheres 770.5
2751 Female, age 85, both hemispheres 443.3
2654 Male, age 80, both hemispheres 426.1
2141 Male, age 76, both hemispheres 357.4
2337 Male, age 61, both hemispheres 230.4
Gigantocellular reticular nuclei, medullary
nTPM: 325.6
2462 Male, age 74, both hemispheres 525.1
1876 Female, age 85, both hemispheres 413.7
2314 Male, age 61, both hemispheres 358.5
2022 Male, age 76, right hemisphere 282.6
2387 Female, age 91, both hemispheres 218.1
2310 Male, age 80, both hemispheres 155.9
Gigantocellular reticular nuclei, pars
nTPM: 262.5
2084 Female, age 85, both hemispheres 420.9
2336 Male, age 61, both hemispheres 296.8
2168 Male, age 76, both hemispheres 244.9
2706 Male, age 80, both hemispheres 178.1
2330 Male, age 80, both hemispheres 171.7
Inferior olive
nTPM: 504.5
2085 Female, age 85, both hemispheres 717.7
2563 Male, age 74, both hemispheres 553.2
2379 Male, age 80, both hemispheres 469.3
2178 Male, age 61, both hemispheres 466.0
2628 Female, age 91, both hemispheres 316.4
Kolliker-Fuse nucleus
nTPM: 418.7
2315 Male, age 76, right hemisphere 811.8
2163 Male, age 80, both hemispheres 308.6
2793 Female, age 91, left hemisphere 135.7
Lateral lemniscal nuclei
nTPM: 217.1
2746 Female, age 85, left hemisphere 299.5
2169 Male, age 76, both hemispheres 270.8
2036 Male, age 80, both hemispheres 237.0
2453 Male, age 74, right hemisphere 152.1
2320 Female, age 91, left hemisphere 126.3
Lateral medullary reticular nucleus
nTPM: 481.6
2305 Male, age 74, both hemispheres 734.8
2190 Female, age 85, both hemispheres 534.3
2852 Male, age 80, both hemispheres 483.6
2804 Female, age 91, both hemispheres 437.7
2374 Male, age 61, both hemispheres 387.8
2044 Male, age 76, both hemispheres 311.4
Lateral parabrachial nucleus
nTPM: 402.7
2139 Female, age 85, right hemisphere 574.9
2792 Male, age 76, both hemispheres 490.5
2013 Male, age 80, both hemispheres 368.4
2790 Male, age 61, both hemispheres 177.0
Lateral vestibular nucleus
nTPM: 376.8
2311 Male, age 80, both hemispheres 383.2
2184 Male, age 76, both hemispheres 370.4
Locus coeruleus
nTPM: 383.6
2317 Female, age 72, unknown 550.5
2788 Male, age 74, unknown 479.7
2014 Male, age 55, unknown 406.1
2123 Female, age 91, both hemispheres 388.3
1980 Male, age 76, both hemispheres 387.1
2162 Male, age 80, both hemispheres 287.1
2720 Male, age 74, both hemispheres 186.5
Medial olivary nucleus
nTPM: 542.9
2138 Female, age 91, both hemispheres 697.8
1943 Male, age 61, both hemispheres 573.6
1962 Male, age 76, both hemispheres 507.7
2851 Male, age 80, both hemispheres 392.4
Medial parabrachial nucleus
nTPM: 322.0
2463 Female, age 85, right hemisphere 390.4
2786 Male, age 76, both hemispheres 354.0
2156 Male, age 61, both hemispheres 328.6
2170 Female, age 91, both hemispheres 301.6
2854 Male, age 80, both hemispheres 235.6
Medial periolivary nuclei
nTPM: 311.8
2791 Male, age 74, right hemisphere 635.9
2063 Male, age 76, both hemispheres 324.7
2171 Female, age 85, both hemispheres 274.2
2081 Male, age 80, both hemispheres 180.9
2458 Female, age 91, both hemispheres 143.1
Medial vestibular nucleus
nTPM: 372.5
2743 Female, age 85, both hemispheres 468.2
2801 Male, age 74, both hemispheres 423.9
2093 Male, age 80, both hemispheres 364.1
2624 Male, age 61, both hemispheres 355.6
2134 Male, age 76, both hemispheres 354.5
2803 Female, age 91, both hemispheres 268.9
Motor facial nucleus
nTPM: 256.3
2365 Male, age 74, right hemisphere 395.2
2062 Male, age 76, both hemispheres 362.2
2126 Male, age 61, both hemispheres 271.3
2795 Female, age 91, both hemispheres 251.0
2697 Female, age 85, both hemispheres 156.8
2327 Male, age 80, both hemispheres 101.4
Motor hypoglossal nucleus
nTPM: 263.1
2461 Male, age 61, both hemispheres 341.6
2277 Male, age 76, both hemispheres 318.4
2125 Female, age 91, both hemispheres 302.7
2182 Male, age 80, both hemispheres 186.1
2132 Female, age 85, both hemispheres 166.8
Motor trigeminal nucleus
nTPM: 238.0
2309 Male, age 76, both hemispheres 383.3
2335 Male, age 61, both hemispheres 352.6
2079 Male, age 80, both hemispheres 177.9
2321 Female, age 91, both hemispheres 151.9
2560 Male, age 74, both hemispheres 124.4
Nuclei of the trapezoid body
nTPM: 244.0
1983 Male, age 76, both hemispheres 336.5
2735 Female, age 85, both hemispheres 283.4
2368 Female, age 91, both hemispheres 230.9
2159 Male, age 61, both hemispheres 200.5
2166 Male, age 80, both hemispheres 168.9
Nucleus ambiguus
nTPM: 356.9
2071 Male, age 76, both hemispheres 556.8
2096 Female, age 85, both hemispheres 157.1
Nucleus cuneatus
nTPM: 332.1
2564 Male, age 74, both hemispheres 529.6
2808 Female, age 85, both hemispheres 416.7
2562 Male, age 61, both hemispheres 402.0
2380 Male, age 80, both hemispheres 400.0
2376 Male, age 61, both hemispheres 384.9
2100 Male, age 76, both hemispheres 286.2
2131 Male, age 76, both hemispheres 225.7
2381 Male, age 80, both hemispheres 174.6
2805 Female, age 91, both hemispheres 169.1
Nucleus gracilis
nTPM: 389.0
2627 Male, age 74, both hemispheres 698.5
2299 Female, age 85, both hemispheres 294.9
2382 Male, age 80, both hemispheres 173.7
Nucleus raphe magnus
nTPM: 230.4
2455 Male, age 74, both hemispheres 438.8
2051 Male, age 76, both hemispheres 307.3
2160 Male, age 61, both hemispheres 211.1
2328 Male, age 80, both hemispheres 176.5
2172 Female, age 85, both hemispheres 127.7
2459 Female, age 91, both hemispheres 120.8
Nucleus raphe obscurus
nTPM: 404.6
2142 Male, age 76, midline 559.4
2845 Female, age 85, midline 377.1
2800 Male, age 61, midline 277.4
Nucleus raphe pallidus
nTPM: 453.5
1924 Male, age 61, midline 640.7
2145 Male, age 76, midline 395.9
2183 Male, age 80, midline 323.9
Nucleus tractus solitarii
nTPM: 407.9
2144 Female, age 91, right hemisphere 815.2
2191 Female, age 85, both hemispheres 345.7
2656 Male, age 76, both hemispheres 293.9
2307 Male, age 80, both hemispheres 176.7
Paramedian reticular nucleus
nTPM: 349.7
2057 Male, age 80, both hemispheres 415.6
2052 Male, age 76, both hemispheres 383.7
2313 Male, age 61, both hemispheres 346.7
2050 Female, age 85, both hemispheres 252.9
Parvicellular reticular nuclei
nTPM: 308.9
2119 Male, age 80, both hemispheres 413.0
2095 Male, age 76, both hemispheres 394.3
2558 Male, age 74, both hemispheres 119.3
Parvicellular reticular nuclei, medullary
nTPM: 312.7
2091 Female, age 85, both hemispheres 355.9
2189 Female, age 91, both hemispheres 302.3
2181 Male, age 80, left hemisphere 280.0
Pedunculopontine tegmental nucleus
nTPM: 383.4
1921 Female, age 85, both hemispheres 441.7
2334 Male, age 80, both hemispheres 409.2
2338 Male, age 61, both hemispheres 299.2
Peritrigeminal nucleus
nTPM: 483.3
2067 Female, age 85, both hemispheres 696.3
2136 Male, age 76, both hemispheres 419.1
2179 Male, age 61, both hemispheres 334.4
Pontine nuclei
nTPM: 192.2
1863 Male, age 55, unknown 305.3
1968 Male, age 76, left hemisphere 255.6
2115 Male, age 80, left hemisphere 196.8
2787 Female, age 85, both hemispheres 195.2
2109 Female, age 72, unknown 187.7
2727 Male, age 61, right hemisphere 162.0
2319 Female, age 91, both hemispheres 160.6
2454 Male, age 74, left hemisphere 74.6
Pontine raphe nucleus
nTPM: 301.0
2853 Male, age 76, midline 347.5
2122 Female, age 85, midline 254.5
Posteroventral cochlear nucleus
nTPM: 335.1
2371 Male, age 61, both hemispheres 559.0
2752 Female, age 85, both hemispheres 358.0
2070 Male, age 76, both hemispheres 301.2
2341 Male, age 80, both hemispheres 280.9
2135 Female, age 91, both hemispheres 176.8
Prepositus hypoglossal nucleus
nTPM: 458.4
2086 Male, age 80, both hemispheres 524.1
2855 Female, age 85, right hemisphere 392.8
Principal sensory trigeminal nucleus
nTPM: 232.8
2324 Male, age 76, both hemispheres 421.9
2158 Male, age 61, both hemispheres 205.6
2008 Male, age 80, left hemisphere 186.3
2367 Female, age 91, left hemisphere 117.4
Reticular pontine nucleus, caudal
nTPM: 181.0
2092 Male, age 76, both hemispheres 382.5
2457 Female, age 91, both hemispheres 122.0
2559 Male, age 74, both hemispheres 110.3
2332 Male, age 80, right hemisphere 109.2
Reticular pontine nucleus, oral
nTPM: 272.3
1939 Male, age 80, both hemispheres 466.8
2167 Male, age 76, both hemispheres 358.0
2012 Female, age 85, both hemispheres 340.1
2366 Female, age 91, both hemispheres 126.2
2361 Male, age 74, both hemispheres 70.6
Reticulotegmental nucleus
nTPM: 263.4
2325 Male, age 76, both hemispheres 338.1
2333 Male, age 80, both hemispheres 298.2
2322 Female, age 91, both hemispheres 242.3
2452 Male, age 74, both hemispheres 175.0
Spinal trigeminal nucleus, caudal
nTPM: 281.5
2308 Male, age 80, both hemispheres 328.3
2642 Male, age 74, both hemispheres 280.5
2447 Male, age 76, both hemispheres 276.4
2312 Male, age 61, both hemispheres 275.5
2390 Female, age 91, both hemispheres 246.8
Spinal trigeminal nucleus, interpolar
nTPM: 305.9
2625 Male, age 61, both hemispheres 424.8
2066 Male, age 76, right hemisphere 347.3
2033 Male, age 80, both hemispheres 290.4
2386 Female, age 85, both hemispheres 246.9
2389 Female, age 91, both hemispheres 219.9
Spinal trigeminal nucleus, oral
nTPM: 279.5
2737 Female, age 85, both hemispheres 340.0
1978 Male, age 76, both hemispheres 309.9
2164 Male, age 80, both hemispheres 188.4
Spinal vestibular nucleus
nTPM: 342.8
2796 Male, age 61, both hemispheres 411.2
2806 Female, age 85, both hemispheres 401.2
2748 Male, age 76, both hemispheres 374.8
2780 Male, age 80, both hemispheres 333.5
2186 Female, age 91, both hemispheres 306.3
2384 Male, age 74, both hemispheres 229.6
Subcoeruleus area
nTPM: 317.0
2369 Female, age 85, left hemisphere 441.4
1958 Male, age 80, both hemispheres 347.0
2323 Female, age 91, left hemisphere 294.1
2451 Male, age 74, both hemispheres 260.6
2089 Male, age 76, left hemisphere 241.9
Superior olive
nTPM: 282.0
2364 Male, age 74, right hemisphere 644.3
2020 Male, age 76, both hemispheres 279.2
1875 Female, age 85, both hemispheres 201.6
2561 Female, age 91, both hemispheres 145.1
2329 Male, age 80, right hemisphere 139.6
Superior vestibular nucleus
nTPM: 693.2
2383 Male, age 74, both hemispheres 1040.5
2061 Male, age 76, both hemispheres 548.7
2015 Male, age 80, both hemispheres 490.5
Ventral medullary reticular nucleus
nTPM: 303.3
2372 Male, age 61, both hemispheres 360.9
2060 Male, age 76, both hemispheres 245.7
Ventral periolivary nuclei
nTPM: 250.8
2130 Female, age 85, both hemispheres 318.9
2023 Male, age 76, both hemispheres 295.5
2165 Male, age 80, both hemispheres 237.0
2794 Female, age 91, left hemisphere 151.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 373.5
2302 Female, age 91, both hemispheres 430.7
1986 Male, age 76, both hemispheres 397.6
2741 Female, age 85, both hemispheres 395.9
2180 Male, age 61, both hemispheres 347.0
2118 Male, age 80, both hemispheres 296.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 269.7
2359 Male, age 61, both hemispheres 389.4
2840 Female, age 85, both hemispheres 296.1
1959 Male, age 76, both hemispheres 294.3
2449 Male, age 74, both hemispheres 240.7
2161 Male, age 80, both hemispheres 199.4
2456 Female, age 91, both hemispheres 198.2

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 679.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 641.4
FF:10165-103B3 76 years, female 731.7
FF:10182-103D2 60 years, female 551.2
Medulla oblongata
Scaled Tags Per Million: 679.5
FF:10155-103A2 76 years, female 793.0
FF:10038-101F2 18-64 years, mixed 683.7
FF:10174-103C3 60 years, female 561.8
Pons
Scaled Tags Per Million: 470.9
FF:10033-101E6 18-54 years, mixed 470.9

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 919.8
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 919.8
Samples: 4

Max nTPM: 1291.2
Min nTPM: 624.3
Sample A Female 883.1
Sample B Female 624.3
Sample C Male 880.7
Sample D Male 1291.2
Pons
nTPM: 755.6
Samples: 4

Max nTPM: 929.0
Min nTPM: 653.7
Sample A Female 657.1
Sample B Female 653.7
Sample C Male 782.6
Sample D Male 929.0

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 260.8
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 260.8
Samples: 4

Max nTPM: 281.2
Min nTPM: 238.0
Sample A Male 261.5
Sample B Male 262.4
Sample C Female 238.0
Sample D Female 281.2

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 5.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.8
77454660 Antisense, RP_070129_01_C02, Mouse strain C57BL/6J (56 days, male) 6.0
79556722 Antisense, RP_071204_01_E02, Mouse strain C57BL/6J (56 days, male) 4.7
109 Antisense, RP_040324_01_F07, Mouse strain C57BL/6J (56 days, male) 3.8
108 Antisense, RP_040324_01_F07, Mouse strain C57BL/6J (56 days, male) 3.5
Pons
Expression energy: 5.1
77454660 Antisense, RP_070129_01_C02, Mouse strain C57BL/6J (56 days, male) 6.2
79556722 Antisense, RP_071204_01_E02, Mouse strain C57BL/6J (56 days, male) 4.8
108 Antisense, RP_040324_01_F07, Mouse strain C57BL/6J (56 days, male) 4.2
109 Antisense, RP_040324_01_F07, Mouse strain C57BL/6J (56 days, male) 4.2

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