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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:69.4 nTPM
FANTOM5:45.1 Scaled Tags Per Million
Pig:157.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA034631Antibody HPA071347Antibody CAB033265Antibody CAB037325
Glial cells MediumNot detectedNot detectedNot detected
Neuronal cells Not detectedLowMediumNot detected









CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 69.4
Samples: 246

Max nTPM: 186.4
Min nTPM: 6.1
Std nTPM: 34.3
Median nTPM: 67.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 186.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 168.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 145.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 143.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 141.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 136.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 132.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 131.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 130.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 130.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 129.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 128.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 128.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 127.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 125.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 125.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 124.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 123.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 123.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 122.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 121.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 121.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 121.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 120.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 119.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 118.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 118.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 115.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 114.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 114.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 112.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 112.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 111.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 111.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 111.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 109.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 109.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 106.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 106.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 104.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 104.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 101.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 101.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 101.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 101.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 100.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 100.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 100.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 100.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 99.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 99.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 99.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 98.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 98.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 97.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 97.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 97.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 97.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 96.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 96.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 95.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 93.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 92.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 92.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 91.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 90.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 90.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 89.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 89.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 89.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 89.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 88.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 88.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 88.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 87.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 87.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 86.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 86.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 85.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 84.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 84.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 84.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 83.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 83.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 82.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 82.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 81.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 80.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 79.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 78.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 78.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 78.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 77.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 77.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 77.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 77.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 77.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 77.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 76.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 75.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 75.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 75.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 75.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 74.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 74.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 74.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 73.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 72.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 72.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 71.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 71.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 71.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 71.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 70.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 70.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 70.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 69.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 69.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 69.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 69.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 69.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 68.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 67.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 67.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 67.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 66.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 65.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 65.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 64.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 64.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 63.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 63.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 63.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 63.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 63.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 62.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 62.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 62.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 61.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 61.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 60.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 60.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 60.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 60.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 59.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 59.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 59.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 58.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 58.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 58.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 58.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 57.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 57.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 56.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 56.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 56.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 56.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 56.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 55.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 55.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 50.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 50.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 50.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 50.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 49.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 49.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 49.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 49.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 49.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 48.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 48.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 46.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 46.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 46.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 46.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 45.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 45.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 44.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 44.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 43.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 43.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 42.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 41.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 40.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 37.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 37.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 37.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 37.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 36.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 36.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 36.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 36.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 35.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 34.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 34.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 34.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 34.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 33.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 33.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 33.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 33.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 32.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 32.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 31.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 30.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 30.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 30.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 29.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 29.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 29.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 29.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 28.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 28.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 28.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 27.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 27.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 27.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 26.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 26.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 26.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 25.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 24.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 24.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 24.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 24.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 24.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 23.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 23.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 23.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 22.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 22.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 22.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 21.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 21.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 21.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 21.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 20.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 20.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 19.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 18.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 17.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 16.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 15.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 14.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 11.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 6.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

45.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.1
FF:10164-103B2 76 years, female 45.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.4
Pig sample Sample description nTPM
Caudate
nTPM: 157.4
Samples: 4

Max nTPM: 220.0
Min nTPM: 97.8
Sample A Female 97.8
Sample B Female 160.0
Sample C Male 220.0
Sample D Male 151.6

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