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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:94.8 nTPM
FANTOM5:258.5 Scaled Tags Per Million
Pig:358.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA013392Antibody HPA015600Antibody CAB004417
Glial cells HighHighMedium
Neuronal cells HighMediumMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 94.8
Samples: 246

Max nTPM: 589.0
Min nTPM: 12.5
Std nTPM: 73.1
Median nTPM: 79.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 589.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 449.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 402.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 375.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 278.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 259.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 247.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 246.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 244.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 239.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 216.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 213.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 208.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 208.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 205.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 203.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 197.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 196.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 195.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 188.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 187.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 187.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 185.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 182.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 178.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 172.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 170.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 169.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 168.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 166.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 165.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 163.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 156.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 154.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 153.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 152.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 151.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 151.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 148.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 146.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 145.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 144.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 142.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 141.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 140.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 140.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 138.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 138.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 138.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 137.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 137.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 134.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 133.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 131.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 131.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 130.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 129.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 126.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 125.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 124.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 123.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 122.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 118.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 117.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 117.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 116.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 116.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 115.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 115.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 115.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 114.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 114.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 114.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 113.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 113.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 111.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 111.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 110.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 109.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 108.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 106.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 105.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 105.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 104.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 103.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 103.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 103.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 103.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 102.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 102.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 101.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 101.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 99.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 99.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 99.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 98.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 98.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 98.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 98.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 98.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 98.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 98.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 98.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 97.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 96.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 96.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 95.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 93.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 92.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 92.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 90.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 89.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 89.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 89.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 89.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 88.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 85.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 85.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 82.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 81.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 80.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 80.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 79.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 79.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 79.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 78.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 78.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 78.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 78.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 76.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 76.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 75.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 75.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 74.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 74.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 74.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 73.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 73.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 72.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 71.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 70.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 70.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 69.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 68.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 68.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 67.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 66.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 66.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 63.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 63.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 63.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 63.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 63.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 62.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 62.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 61.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 60.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 59.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 59.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 58.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 57.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 57.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 57.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 57.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 56.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 56.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 55.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 55.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 54.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 53.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 52.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 52.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 50.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 49.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 49.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 48.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 46.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 45.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 45.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 45.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 44.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 44.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 44.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 43.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 42.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 42.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 41.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 41.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 39.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 39.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 39.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 39.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 37.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 37.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 37.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 36.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 36.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 35.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 35.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 35.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 35.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 34.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 34.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 33.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 33.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 32.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 32.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 31.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 31.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 30.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 30.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 29.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 29.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 29.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 28.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 27.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 27.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 26.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 26.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 26.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 25.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 24.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 24.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 24.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 23.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 22.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 21.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 21.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 21.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 20.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 20.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 20.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 19.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 19.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 17.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 17.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 17.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 16.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 16.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 16.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 15.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 14.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 14.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 13.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 13.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 12.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

258.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 258.5
FF:10164-103B2 76 years, female 258.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

358.8
Pig sample Sample description nTPM
Caudate
nTPM: 358.8
Samples: 4

Max nTPM: 411.4
Min nTPM: 309.2
Sample A Female 319.9
Sample B Female 394.7
Sample C Male 411.4
Sample D Male 309.2

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