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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

91.108
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:142.3 nTPM
GTEx:147.6 nTPM
FANTOM5:303.4 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA013392Antibody HPA015600Antibody CAB004417
Glial cells HighHighMedium
Neuronal cells HighMediumHigh







HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody CAB078783
Hippocampal formation mean intensity 91.108
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 71.600
Molecular layer of the dentate gyrus 74.388
Granular dentate gyrus 65.181
CA1 - oriens layer 82.562
CA1 - pyramidal layer 65.014
CA1 - radiatum layer 87.563
CA2 - oriens layer 79.224
CA2 - pyramidal layer 61.739
CA2 - radiatum layer 77.462
CA3 - oriens layer 62.269
CA3 - pyramidal layer 61.772
CA3 - radiatum layer 69.601
Stratum lucidum 70.593
Lacunosum moleculare 70.744
Subiculum 77.210

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

142.3
Sample id Sample description nTPM
Hippocampus
nTPM: 142.3
2621 Female, age 67, right hemisphere 199.7
1898 Male, age 80, left hemisphere 190.6
1855 Male, age 76, left hemisphere 134.1
2148 Female, age 91, left hemisphere 125.1
2529 Female, age 94, left hemisphere 116.4
1911 Female, age 85, right hemisphere 88.0

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 147.6
Samples: 197

Max nTPM: 639.0
Min nTPM: 19.1
Std nTPM: 112.3
Median nTPM: 118.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 639.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 611.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 546.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 536.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 459.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 435.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 428.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 401.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 400.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 387.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 375.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 355.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 342.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 336.6
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 330.4
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 325.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 325.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 319.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 313.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 311.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 305.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 283.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 278.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 271.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 261.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 260.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 259.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 249.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 248.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 245.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 243.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 239.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 239.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 236.5
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 222.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 219.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 213.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 212.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 211.2
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 207.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 206.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 205.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 202.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 198.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 197.9
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 196.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 196.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 195.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 189.9
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 186.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 186.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 183.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 182.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 180.1
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 179.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 177.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 176.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 172.6
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 172.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 169.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 166.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 166.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 164.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 164.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 161.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 160.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 159.0
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 156.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 154.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 154.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 152.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 152.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 150.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 149.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 144.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 144.1
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 142.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 139.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 138.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 137.5
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 136.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 136.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 136.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 136.0
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 134.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 132.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 131.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 126.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 125.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 124.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 122.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 122.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 120.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 120.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 120.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 118.8
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 118.8
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 118.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 118.0
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 117.3
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 115.5
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 115.2
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 114.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 114.7
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 113.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 110.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 110.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 109.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 108.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 108.0
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 106.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 106.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 104.9
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 103.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 103.6
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 102.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 101.5
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 99.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 96.9
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 96.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 94.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 93.1
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 91.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 90.9
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 89.2
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 88.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 88.4
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 87.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 87.8
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 87.1
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 86.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 85.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 84.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 83.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 80.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 79.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 78.9
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 76.8
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 75.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 74.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 73.9
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 73.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 73.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 72.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 70.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 70.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 69.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 69.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 68.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 66.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 66.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 65.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 64.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 64.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 63.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 62.5
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 62.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 61.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 61.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 59.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 58.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 57.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 56.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 53.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 53.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 52.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 52.2
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 51.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 49.6
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 48.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 47.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 47.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 46.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 46.0
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 44.4
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 43.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 43.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 42.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 42.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 40.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 39.0
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 36.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 36.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 33.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 32.1
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 30.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 30.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 29.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 28.3
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 27.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 27.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 27.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 26.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 25.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 25.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 25.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 19.1
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

303.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 303.4
FF:10169-103B7 60 years, female 309.4
FF:10153-102I9 76 years, female 297.4

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