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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:491.1 nTPM
FANTOM5:369.0 Scaled Tags Per Million
Pig:34.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA036048Antibody CAB002427
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

491.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 491.1
Samples: 246

Max nTPM: 1900.2
Min nTPM: 174.8
Std nTPM: 181.2
Median nTPM: 454.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1900.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1351.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1053.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1037.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 920.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 912.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 897.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 889.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 884.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 882.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 850.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 840.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 833.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 820.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 795.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 780.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 770.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 770.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 768.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 697.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 697.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 682.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 680.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 680.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 674.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 673.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 673.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 662.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 655.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 654.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 647.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 646.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 642.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 640.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 639.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 638.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 638.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 633.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 618.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 616.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 612.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 610.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 607.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 598.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 594.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 590.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 588.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 587.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 585.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 584.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 582.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 582.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 579.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 576.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 576.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 569.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 563.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 557.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 553.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 553.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 550.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 549.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 548.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 547.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 542.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 541.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 541.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 536.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 535.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 531.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 530.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 529.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 523.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 520.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 520.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 519.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 519.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 517.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 515.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 515.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 515.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 513.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 512.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 511.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 510.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 510.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 507.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 506.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 505.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 504.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 501.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 499.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 496.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 491.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 487.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 484.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 481.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 480.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 479.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 479.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 478.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 477.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 472.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 472.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 470.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 470.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 469.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 468.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 468.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 468.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 467.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 467.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 466.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 465.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 464.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 463.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 460.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 460.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 460.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 458.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 456.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 455.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 454.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 453.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 453.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 453.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 452.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 449.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 449.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 448.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 447.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 444.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 443.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 441.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 438.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 437.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 437.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 436.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 434.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 434.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 434.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 431.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 431.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 430.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 429.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 428.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 427.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 427.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 425.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 422.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 419.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 419.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 418.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 417.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 416.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 414.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 412.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 408.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 408.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 408.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 406.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 406.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 406.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 406.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 404.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 404.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 399.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 399.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 397.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 397.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 396.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 396.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 396.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 395.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 393.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 390.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 390.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 389.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 387.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 386.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 384.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 383.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 383.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 383.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 382.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 382.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 381.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 380.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 377.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 374.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 373.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 373.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 371.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 368.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 368.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 366.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 366.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 365.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 365.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 365.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 361.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 361.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 360.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 358.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 354.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 353.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 351.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 351.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 349.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 349.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 348.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 347.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 347.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 346.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 345.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 345.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 343.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 341.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 341.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 332.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 332.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 331.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 330.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 328.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 326.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 325.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 318.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 316.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 315.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 315.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 312.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 312.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 309.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 307.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 306.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 305.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 304.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 303.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 280.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 279.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 268.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 265.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 254.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 208.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 203.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 174.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

369.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 369.0
FF:10164-103B2 76 years, female 369.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.4
Pig sample Sample description nTPM
Caudate
nTPM: 34.5
Samples: 4

Max nTPM: 42.4
Min nTPM: 28.5
Sample A Female 28.5
Sample B Female 35.8
Sample C Male 42.4
Sample D Male 31.1

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