PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:73.8 nTPM
FANTOM5:79.7 Scaled Tags Per Million
Pig:28.5 nTPM
Mouse:6.6 nTPM
Allen mouse:1.1 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 73.8
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 52.4
1984 Male, age 76, both hemispheres 63.0
2090 Male, age 80, both hemispheres 53.7
2301 Female, age 85, both hemispheres 50.4
2188 Female, age 91, both hemispheres 42.6
Area postrema
nTPM: 67.1
2799 Male, age 61, both hemispheres 91.5
2306 Male, age 80, both hemispheres 60.1
2054 Male, age 76, both hemispheres 49.8
Dorsal cochlear nucleus
nTPM: 54.2
2802 Male, age 74, right hemisphere 73.1
2378 Male, age 80, both hemispheres 56.1
2058 Male, age 76, both hemispheres 52.9
2187 Female, age 91, both hemispheres 45.0
2370 Male, age 61, both hemispheres 44.0
Dorsal medullary reticular nucleus
nTPM: 52.6
2373 Male, age 61, both hemispheres 54.4
2040 Female, age 85, both hemispheres 52.7
2088 Male, age 76, both hemispheres 50.8
Dorsal motor vagal complex
nTPM: 65.5
2844 Male, age 55, unknown 81.5
2643 Male, age 74, both hemispheres 80.7
2797 Male, age 61, both hemispheres 79.6
2813 Female, age 72, unknown 67.6
2000 Male, age 74, unknown 57.7
2133 Female, age 91, both hemispheres 55.8
2807 Female, age 85, both hemispheres 54.9
2185 Male, age 76, both hemispheres 45.8
Dorsal tegmental nucleus
nTPM: 47.3
2358 Male, age 61, both hemispheres 50.8
2083 Male, age 80, both hemispheres 49.8
2326 Male, age 74, both hemispheres 49.4
1936 Male, age 76, left hemisphere 39.1
Dorsolateral tegmental area
nTPM: 43.8
2337 Male, age 61, both hemispheres 53.6
2654 Male, age 80, both hemispheres 47.0
2141 Male, age 76, both hemispheres 43.7
2751 Female, age 85, both hemispheres 41.2
2360 Male, age 74, both hemispheres 33.4
Gigantocellular reticular nuclei, medullary
nTPM: 44.6
2314 Male, age 61, both hemispheres 60.0
2387 Female, age 91, both hemispheres 44.6
2310 Male, age 80, both hemispheres 41.8
1876 Female, age 85, both hemispheres 41.4
2022 Male, age 76, right hemisphere 40.0
2462 Male, age 74, both hemispheres 39.6
Gigantocellular reticular nuclei, pars
nTPM: 48.1
2084 Female, age 85, both hemispheres 54.4
2706 Male, age 80, both hemispheres 52.9
2330 Male, age 80, both hemispheres 51.5
2336 Male, age 61, both hemispheres 48.0
2168 Male, age 76, both hemispheres 33.5
Inferior olive
nTPM: 73.8
2563 Male, age 74, both hemispheres 85.2
2379 Male, age 80, both hemispheres 84.5
2085 Female, age 85, both hemispheres 73.3
2178 Male, age 61, both hemispheres 67.4
2628 Female, age 91, both hemispheres 58.8
Kolliker-Fuse nucleus
nTPM: 42.8
2163 Male, age 80, both hemispheres 48.2
2315 Male, age 76, right hemisphere 41.3
2793 Female, age 91, left hemisphere 38.8
Lateral lemniscal nuclei
nTPM: 33.8
2453 Male, age 74, right hemisphere 40.8
2746 Female, age 85, left hemisphere 34.3
2320 Female, age 91, left hemisphere 33.6
2036 Male, age 80, both hemispheres 31.1
2169 Male, age 76, both hemispheres 29.5
Lateral medullary reticular nucleus
nTPM: 53.0
2374 Male, age 61, both hemispheres 63.8
2804 Female, age 91, both hemispheres 59.7
2852 Male, age 80, both hemispheres 54.6
2190 Female, age 85, both hemispheres 51.7
2305 Male, age 74, both hemispheres 49.5
2044 Male, age 76, both hemispheres 39.1
Lateral parabrachial nucleus
nTPM: 41.3
2790 Male, age 61, both hemispheres 50.6
2792 Male, age 76, both hemispheres 38.7
2139 Female, age 85, right hemisphere 38.5
2013 Male, age 80, both hemispheres 37.6
Lateral vestibular nucleus
nTPM: 46.3
2311 Male, age 80, both hemispheres 49.4
2184 Male, age 76, both hemispheres 43.3
Locus coeruleus
nTPM: 47.4
2014 Male, age 55, unknown 54.0
2162 Male, age 80, both hemispheres 51.5
1980 Male, age 76, both hemispheres 46.7
2788 Male, age 74, unknown 46.4
2720 Male, age 74, both hemispheres 44.8
2123 Female, age 91, both hemispheres 44.3
2317 Female, age 72, unknown 43.7
Medial olivary nucleus
nTPM: 55.4
2138 Female, age 91, both hemispheres 64.1
1943 Male, age 61, both hemispheres 55.5
2851 Male, age 80, both hemispheres 55.4
1962 Male, age 76, both hemispheres 46.7
Medial parabrachial nucleus
nTPM: 46.7
2463 Female, age 85, right hemisphere 52.3
2156 Male, age 61, both hemispheres 48.8
2170 Female, age 91, both hemispheres 46.8
2854 Male, age 80, both hemispheres 43.0
2786 Male, age 76, both hemispheres 42.6
Medial periolivary nuclei
nTPM: 39.1
2081 Male, age 80, both hemispheres 47.0
2458 Female, age 91, both hemispheres 44.2
2791 Male, age 74, right hemisphere 39.2
2171 Female, age 85, both hemispheres 35.1
2063 Male, age 76, both hemispheres 30.3
Medial vestibular nucleus
nTPM: 46.6
2624 Male, age 61, both hemispheres 51.6
2801 Male, age 74, both hemispheres 50.1
2134 Male, age 76, both hemispheres 49.6
2093 Male, age 80, both hemispheres 44.3
2803 Female, age 91, both hemispheres 43.9
2743 Female, age 85, both hemispheres 39.9
Motor facial nucleus
nTPM: 40.6
2795 Female, age 91, both hemispheres 50.3
2126 Male, age 61, both hemispheres 42.1
2697 Female, age 85, both hemispheres 42.1
2365 Male, age 74, right hemisphere 41.5
2327 Male, age 80, both hemispheres 38.5
2062 Male, age 76, both hemispheres 29.2
Motor hypoglossal nucleus
nTPM: 54.3
2461 Male, age 61, both hemispheres 59.5
2182 Male, age 80, both hemispheres 58.7
2277 Male, age 76, both hemispheres 54.3
2132 Female, age 85, both hemispheres 50.0
2125 Female, age 91, both hemispheres 49.0
Motor trigeminal nucleus
nTPM: 41.6
2309 Male, age 76, both hemispheres 47.3
2335 Male, age 61, both hemispheres 44.9
2321 Female, age 91, both hemispheres 42.6
2560 Male, age 74, both hemispheres 40.8
2079 Male, age 80, both hemispheres 32.4
Nuclei of the trapezoid body
nTPM: 39.0
2166 Male, age 80, both hemispheres 47.4
2368 Female, age 91, both hemispheres 45.4
2159 Male, age 61, both hemispheres 35.9
1983 Male, age 76, both hemispheres 33.6
2735 Female, age 85, both hemispheres 32.6
Nucleus ambiguus
nTPM: 48.4
2096 Female, age 85, both hemispheres 52.9
2071 Male, age 76, both hemispheres 43.8
Nucleus cuneatus
nTPM: 54.5
2564 Male, age 74, both hemispheres 68.0
2562 Male, age 61, both hemispheres 59.9
2381 Male, age 80, both hemispheres 56.9
2380 Male, age 80, both hemispheres 56.6
2805 Female, age 91, both hemispheres 53.4
2100 Male, age 76, both hemispheres 50.0
2131 Male, age 76, both hemispheres 49.8
2808 Female, age 85, both hemispheres 48.5
2376 Male, age 61, both hemispheres 46.8
Nucleus gracilis
nTPM: 59.7
2627 Male, age 74, both hemispheres 65.5
2382 Male, age 80, both hemispheres 59.6
2299 Female, age 85, both hemispheres 53.9
Nucleus raphe magnus
nTPM: 37.4
2051 Male, age 76, both hemispheres 43.7
2328 Male, age 80, both hemispheres 41.6
2455 Male, age 74, both hemispheres 38.8
2459 Female, age 91, both hemispheres 35.6
2172 Female, age 85, both hemispheres 34.4
2160 Male, age 61, both hemispheres 30.0
Nucleus raphe obscurus
nTPM: 47.6
2800 Male, age 61, midline 51.0
2845 Female, age 85, midline 50.6
2142 Male, age 76, midline 41.1
Nucleus raphe pallidus
nTPM: 49.9
2183 Male, age 80, midline 52.8
2145 Male, age 76, midline 49.5
1924 Male, age 61, midline 47.5
Nucleus tractus solitarii
nTPM: 53.8
2307 Male, age 80, both hemispheres 70.1
2656 Male, age 76, both hemispheres 52.0
2191 Female, age 85, both hemispheres 51.8
2144 Female, age 91, right hemisphere 41.1
Paramedian reticular nucleus
nTPM: 44.7
2057 Male, age 80, both hemispheres 52.2
2313 Male, age 61, both hemispheres 49.9
2050 Female, age 85, both hemispheres 38.8
2052 Male, age 76, both hemispheres 38.1
Parvicellular reticular nuclei
nTPM: 43.5
2119 Male, age 80, both hemispheres 52.8
2095 Male, age 76, both hemispheres 39.3
2558 Male, age 74, both hemispheres 38.6
Parvicellular reticular nuclei, medullary
nTPM: 53.4
2091 Female, age 85, both hemispheres 55.9
2181 Male, age 80, left hemisphere 55.6
2189 Female, age 91, both hemispheres 48.7
Pedunculopontine tegmental nucleus
nTPM: 48.8
2338 Male, age 61, both hemispheres 51.1
2334 Male, age 80, both hemispheres 50.2
1921 Female, age 85, both hemispheres 45.1
Peritrigeminal nucleus
nTPM: 48.6
2179 Male, age 61, both hemispheres 51.3
2067 Female, age 85, both hemispheres 49.3
2136 Male, age 76, both hemispheres 45.3
Pontine nuclei
nTPM: 36.0
2109 Female, age 72, unknown 45.1
2115 Male, age 80, left hemisphere 44.0
1863 Male, age 55, unknown 36.1
2454 Male, age 74, left hemisphere 34.5
2787 Female, age 85, both hemispheres 34.2
2319 Female, age 91, both hemispheres 34.0
1968 Male, age 76, left hemisphere 32.2
2727 Male, age 61, right hemisphere 28.4
Pontine raphe nucleus
nTPM: 36.6
2853 Male, age 76, midline 40.1
2122 Female, age 85, midline 33.1
Posteroventral cochlear nucleus
nTPM: 43.5
2371 Male, age 61, both hemispheres 46.3
2341 Male, age 80, both hemispheres 44.2
2752 Female, age 85, both hemispheres 43.7
2135 Female, age 91, both hemispheres 43.1
2070 Male, age 76, both hemispheres 40.3
Prepositus hypoglossal nucleus
nTPM: 51.9
2086 Male, age 80, both hemispheres 60.1
2855 Female, age 85, right hemisphere 43.8
Principal sensory trigeminal nucleus
nTPM: 35.3
2324 Male, age 76, both hemispheres 43.9
2367 Female, age 91, left hemisphere 34.3
2158 Male, age 61, both hemispheres 33.9
2008 Male, age 80, left hemisphere 29.0
Reticular pontine nucleus, caudal
nTPM: 36.9
2559 Male, age 74, both hemispheres 45.2
2457 Female, age 91, both hemispheres 35.5
2332 Male, age 80, right hemisphere 33.5
2092 Male, age 76, both hemispheres 33.4
Reticular pontine nucleus, oral
nTPM: 36.7
1939 Male, age 80, both hemispheres 43.8
2167 Male, age 76, both hemispheres 39.3
2361 Male, age 74, both hemispheres 36.6
2012 Female, age 85, both hemispheres 32.0
2366 Female, age 91, both hemispheres 32.0
Reticulotegmental nucleus
nTPM: 44.8
2322 Female, age 91, both hemispheres 48.9
2452 Male, age 74, both hemispheres 47.2
2333 Male, age 80, both hemispheres 45.3
2325 Male, age 76, both hemispheres 37.7
Spinal trigeminal nucleus, caudal
nTPM: 52.4
2308 Male, age 80, both hemispheres 61.3
2642 Male, age 74, both hemispheres 57.0
2390 Female, age 91, both hemispheres 55.0
2312 Male, age 61, both hemispheres 46.0
2447 Male, age 76, both hemispheres 42.5
Spinal trigeminal nucleus, interpolar
nTPM: 45.0
2033 Male, age 80, both hemispheres 52.3
2625 Male, age 61, both hemispheres 51.1
2386 Female, age 85, both hemispheres 43.0
2389 Female, age 91, both hemispheres 42.3
2066 Male, age 76, right hemisphere 36.5
Spinal trigeminal nucleus, oral
nTPM: 45.7
2164 Male, age 80, both hemispheres 50.3
2737 Female, age 85, both hemispheres 45.1
1978 Male, age 76, both hemispheres 41.6
Spinal vestibular nucleus
nTPM: 47.6
2384 Male, age 74, both hemispheres 55.3
2780 Male, age 80, both hemispheres 49.1
2806 Female, age 85, both hemispheres 46.8
2796 Male, age 61, both hemispheres 46.6
2186 Female, age 91, both hemispheres 45.3
2748 Male, age 76, both hemispheres 42.6
Subcoeruleus area
nTPM: 42.4
2323 Female, age 91, left hemisphere 49.8
2451 Male, age 74, both hemispheres 49.5
1958 Male, age 80, both hemispheres 41.9
2369 Female, age 85, left hemisphere 37.0
2089 Male, age 76, left hemisphere 33.8
Superior olive
nTPM: 38.1
2329 Male, age 80, right hemisphere 45.4
2561 Female, age 91, both hemispheres 40.9
2364 Male, age 74, right hemisphere 38.2
2020 Male, age 76, both hemispheres 34.1
1875 Female, age 85, both hemispheres 31.7
Superior vestibular nucleus
nTPM: 46.7
2061 Male, age 76, both hemispheres 50.2
2015 Male, age 80, both hemispheres 45.6
2383 Male, age 74, both hemispheres 44.2
Ventral medullary reticular nucleus
nTPM: 53.5
2372 Male, age 61, both hemispheres 61.0
2060 Male, age 76, both hemispheres 46.0
Ventral periolivary nuclei
nTPM: 37.8
2165 Male, age 80, both hemispheres 41.9
2130 Female, age 85, both hemispheres 38.8
2794 Female, age 91, left hemisphere 36.6
2023 Male, age 76, both hemispheres 34.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 51.3
2180 Male, age 61, both hemispheres 59.6
2118 Male, age 80, both hemispheres 57.4
2302 Female, age 91, both hemispheres 54.4
2741 Female, age 85, both hemispheres 45.2
1986 Male, age 76, both hemispheres 39.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 41.4
2840 Female, age 85, both hemispheres 45.7
2161 Male, age 80, both hemispheres 44.7
2359 Male, age 61, both hemispheres 43.9
2456 Female, age 91, both hemispheres 42.4
2449 Male, age 74, both hemispheres 39.3
1959 Male, age 76, both hemispheres 32.4

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 79.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 72.9
FF:10182-103D2 60 years, female 102.4
FF:10165-103B3 76 years, female 43.4
Medulla oblongata
Scaled Tags Per Million: 79.7
FF:10038-101F2 18-64 years, mixed 108.6
FF:10174-103C3 60 years, female 86.2
FF:10155-103A2 76 years, female 44.5
Pons
Scaled Tags Per Million: 66.7
FF:10033-101E6 18-54 years, mixed 66.7

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 28.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 26.9
Samples: 4

Max nTPM: 32.6
Min nTPM: 21.3
Sample A Female 21.3
Sample B Female 30.7
Sample C Male 32.6
Sample D Male 23.0
Pons
nTPM: 28.5
Samples: 4

Max nTPM: 33.6
Min nTPM: 22.1
Sample A Female 33.6
Sample B Female 31.3
Sample C Male 26.9
Sample D Male 22.1

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 6.6
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 6.6
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.0
Sample A Male 7.8
Sample B Male 6.0
Sample C Female 6.4
Sample D Female 6.0

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 1.1
73992943 Antisense, RP_051214_03_D07, Mouse strain C57BL/6J (56 days, male) 2.2
69626582 Antisense, RP_050426_04_H10, Mouse strain C57BL/6J (56 days, male) 0.1
Pons
Expression energy: 0.4
73992943 Antisense, RP_051214_03_D07, Mouse strain C57BL/6J (56 days, male) 0.7
69626582 Antisense, RP_050426_04_H10, Mouse strain C57BL/6J (56 days, male) 0.1

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