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ASPHD1
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  • ASPHD1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:104.7 nTPM
FANTOM5:129.8 Scaled Tags Per Million
Pig:88.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA045175
Glial cells Low
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 104.7
Samples: 246

Max nTPM: 259.1
Min nTPM: 16.8
Std nTPM: 41.0
Median nTPM: 101.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 259.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 238.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 233.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 229.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 216.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 195.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 194.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 192.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 190.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 174.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 174.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 172.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 169.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 167.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 166.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 164.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 163.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 160.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 158.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 158.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 158.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 157.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 157.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 157.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 156.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 156.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 155.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 155.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 152.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 151.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 149.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 149.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 148.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 146.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 146.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 146.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 146.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 145.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 145.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 145.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 144.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 143.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 143.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 142.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 142.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 139.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 137.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 137.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 136.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 135.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 135.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 134.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 133.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 133.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 133.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 132.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 131.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 131.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 131.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 131.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 131.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 131.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 130.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 129.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 128.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 127.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 127.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 127.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 126.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 126.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 126.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 126.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 126.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 125.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 124.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 123.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 120.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 120.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 120.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 120.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 120.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 120.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 118.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 118.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 118.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 117.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 117.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 116.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 115.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 115.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 115.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 114.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 114.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 114.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 113.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 113.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 112.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 112.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 112.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 112.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 111.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 111.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 110.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 110.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 110.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 110.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 109.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 108.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 108.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 106.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 106.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 105.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 105.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 105.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 104.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 104.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 104.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 103.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 103.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 103.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 101.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 101.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 101.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 101.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 101.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 100.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 100.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 100.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 99.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 99.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 99.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 99.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 98.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 98.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 98.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 97.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 96.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 96.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 95.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 95.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 95.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 95.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 95.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 95.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 94.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 94.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 94.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 93.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 93.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 92.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 92.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 92.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 92.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 91.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 90.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 90.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 89.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 89.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 89.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 89.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 88.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 87.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 87.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 87.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 86.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 86.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 84.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 82.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 82.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 82.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 82.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 81.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 81.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 80.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 80.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 80.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 79.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 77.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 77.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 75.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 75.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 74.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 74.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 74.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 74.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 73.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 73.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 71.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 71.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 70.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 69.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 69.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 68.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 68.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 68.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 67.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 67.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 66.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 66.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 66.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 66.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 66.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 66.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 66.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 65.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 65.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 64.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 63.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 61.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 60.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 60.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 60.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 60.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 59.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 58.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 56.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 56.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 55.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 55.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 54.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 54.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 54.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 53.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 53.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 53.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 52.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 51.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 50.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 49.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 49.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 49.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 49.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 47.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 45.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 43.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 42.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 39.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 38.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 35.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 33.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 33.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 32.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 31.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 29.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 22.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 16.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

129.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 129.8
FF:10164-103B2 76 years, female 129.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.3
Pig sample Sample description nTPM
Caudate
nTPM: 88.4
Samples: 4

Max nTPM: 114.4
Min nTPM: 67.9
Sample A Female 67.9
Sample B Female 80.5
Sample C Male 114.4
Sample D Male 90.6

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