PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Medulla oblongatai 		62.166
Mouse brain, Intensity
Ponsi 		97.436
RNA expressioni
HPA Brain:49.2 nTPM
FANTOM5:23.1 Scaled Tags Per Million
Pig:25.7 nTPM
Mouse:26.1 nTPM
Allen mouse:2.3 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei , antibody CAB079018
Medulla oblongata mean intensity 62.166
intensityi
FRONT BACK
Nucleus of the solitary tract 27.089
Raphe magnus nucleus 27.394
Cochlear nucleus 3.044
Lateral paragigantocellular nucleus 29.460
Raphe pallidus nucleus 40.215
Facial nucleus 14.913
Hypoglossal nucleus 24.802
Ambiguus nucleus 54.751
External cuneate nucleus 6.825
Inferior olivary nucleus 21.817
Raphe obscures nucleus 56.193
Dorsal motor nucleus of vagus 44.879
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 14.502
Parabrachial nucleus 48.210
Principle sensory trigeminal nucleus 10.146
Locus coeruleus 95.036
Pontine nucleus 19.195
Vestibular nucleus 28.573
Pontine reticular nucleus, oral 4.335
Lateral lemniscus 2.503
Superior paraolivary nucleus 9.781

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 49.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 43.1
1984 Male, age 76, both hemispheres 47.2
2090 Male, age 80, both hemispheres 44.6
2188 Female, age 91, both hemispheres 42.4
2301 Female, age 85, both hemispheres 38.5
Area postrema
nTPM: 49.2
2799 Male, age 61, both hemispheres 60.3
2054 Male, age 76, both hemispheres 44.4
2306 Male, age 80, both hemispheres 42.8
Dorsal cochlear nucleus
nTPM: 40.3
2370 Male, age 61, both hemispheres 43.7
2378 Male, age 80, both hemispheres 42.8
2802 Male, age 74, right hemisphere 40.6
2187 Female, age 91, both hemispheres 37.2
2058 Male, age 76, both hemispheres 37.0
Dorsal medullary reticular nucleus
nTPM: 39.9
2373 Male, age 61, both hemispheres 46.4
2088 Male, age 76, both hemispheres 38.5
2040 Female, age 85, both hemispheres 34.7
Dorsal motor vagal complex
nTPM: 44.7
2797 Male, age 61, both hemispheres 58.1
2844 Male, age 55, unknown 45.6
2807 Female, age 85, both hemispheres 45.0
2813 Female, age 72, unknown 44.4
2185 Male, age 76, both hemispheres 42.4
2643 Male, age 74, both hemispheres 41.3
2000 Male, age 74, unknown 40.7
2133 Female, age 91, both hemispheres 39.9
Dorsal tegmental nucleus
nTPM: 40.7
2358 Male, age 61, both hemispheres 44.4
2083 Male, age 80, both hemispheres 41.0
2326 Male, age 74, both hemispheres 40.5
1936 Male, age 76, left hemisphere 37.0
Dorsolateral tegmental area
nTPM: 43.8
2141 Male, age 76, both hemispheres 50.6
2337 Male, age 61, both hemispheres 48.7
2751 Female, age 85, both hemispheres 41.7
2360 Male, age 74, both hemispheres 39.2
2654 Male, age 80, both hemispheres 38.9
Gigantocellular reticular nuclei, medullary
nTPM: 37.8
2314 Male, age 61, both hemispheres 42.8
2387 Female, age 91, both hemispheres 39.6
1876 Female, age 85, both hemispheres 37.8
2310 Male, age 80, both hemispheres 37.6
2022 Male, age 76, right hemisphere 36.3
2462 Male, age 74, both hemispheres 32.6
Gigantocellular reticular nuclei, pars
nTPM: 38.5
2336 Male, age 61, both hemispheres 41.9
2706 Male, age 80, both hemispheres 40.2
2084 Female, age 85, both hemispheres 40.1
2330 Male, age 80, both hemispheres 38.6
2168 Male, age 76, both hemispheres 31.8
Inferior olive
nTPM: 41.4
2178 Male, age 61, both hemispheres 44.4
2563 Male, age 74, both hemispheres 43.1
2628 Female, age 91, both hemispheres 41.3
2379 Male, age 80, both hemispheres 40.9
2085 Female, age 85, both hemispheres 37.3
Kolliker-Fuse nucleus
nTPM: 38.5
2163 Male, age 80, both hemispheres 38.9
2315 Male, age 76, right hemisphere 38.4
2793 Female, age 91, left hemisphere 38.1
Lateral lemniscal nuclei
nTPM: 35.4
2320 Female, age 91, left hemisphere 39.8
2746 Female, age 85, left hemisphere 36.2
2036 Male, age 80, both hemispheres 35.1
2453 Male, age 74, right hemisphere 34.3
2169 Male, age 76, both hemispheres 31.6
Lateral medullary reticular nucleus
nTPM: 38.5
2852 Male, age 80, both hemispheres 44.2
2305 Male, age 74, both hemispheres 39.7
2804 Female, age 91, both hemispheres 39.7
2374 Male, age 61, both hemispheres 39.3
2190 Female, age 85, both hemispheres 39.0
2044 Male, age 76, both hemispheres 29.2
Lateral parabrachial nucleus
nTPM: 40.9
2792 Male, age 76, both hemispheres 45.5
2790 Male, age 61, both hemispheres 43.3
2013 Male, age 80, both hemispheres 38.5
2139 Female, age 85, right hemisphere 36.5
Lateral vestibular nucleus
nTPM: 39.7
2311 Male, age 80, both hemispheres 40.6
2184 Male, age 76, both hemispheres 38.9
Locus coeruleus
nTPM: 41.2
2317 Female, age 72, unknown 45.5
1980 Male, age 76, both hemispheres 44.3
2162 Male, age 80, both hemispheres 42.3
2014 Male, age 55, unknown 42.0
2720 Male, age 74, both hemispheres 38.1
2123 Female, age 91, both hemispheres 38.0
2788 Male, age 74, unknown 38.0
Medial olivary nucleus
nTPM: 42.4
1943 Male, age 61, both hemispheres 43.8
2138 Female, age 91, both hemispheres 43.5
1962 Male, age 76, both hemispheres 42.4
2851 Male, age 80, both hemispheres 39.9
Medial parabrachial nucleus
nTPM: 41.3
2463 Female, age 85, right hemisphere 54.7
2156 Male, age 61, both hemispheres 40.6
2786 Male, age 76, both hemispheres 38.7
2170 Female, age 91, both hemispheres 37.2
2854 Male, age 80, both hemispheres 35.2
Medial periolivary nuclei
nTPM: 34.9
2081 Male, age 80, both hemispheres 42.6
2458 Female, age 91, both hemispheres 38.9
2791 Male, age 74, right hemisphere 33.5
2171 Female, age 85, both hemispheres 32.4
2063 Male, age 76, both hemispheres 26.9
Medial vestibular nucleus
nTPM: 36.5
2134 Male, age 76, both hemispheres 39.6
2093 Male, age 80, both hemispheres 38.0
2624 Male, age 61, both hemispheres 37.9
2743 Female, age 85, both hemispheres 37.5
2803 Female, age 91, both hemispheres 33.4
2801 Male, age 74, both hemispheres 32.8
Motor facial nucleus
nTPM: 34.6
2126 Male, age 61, both hemispheres 38.9
2795 Female, age 91, both hemispheres 38.8
2365 Male, age 74, right hemisphere 34.9
2327 Male, age 80, both hemispheres 34.7
2697 Female, age 85, both hemispheres 31.2
2062 Male, age 76, both hemispheres 29.4
Motor hypoglossal nucleus
nTPM: 41.8
2277 Male, age 76, both hemispheres 46.6
2182 Male, age 80, both hemispheres 44.5
2461 Male, age 61, both hemispheres 42.4
2132 Female, age 85, both hemispheres 38.4
2125 Female, age 91, both hemispheres 37.1
Motor trigeminal nucleus
nTPM: 38.2
2335 Male, age 61, both hemispheres 41.3
2309 Male, age 76, both hemispheres 38.9
2321 Female, age 91, both hemispheres 38.7
2560 Male, age 74, both hemispheres 36.7
2079 Male, age 80, both hemispheres 35.5
Nuclei of the trapezoid body
nTPM: 33.1
2166 Male, age 80, both hemispheres 37.0
2368 Female, age 91, both hemispheres 36.5
2735 Female, age 85, both hemispheres 32.0
1983 Male, age 76, both hemispheres 30.3
2159 Male, age 61, both hemispheres 30.0
Nucleus ambiguus
nTPM: 42.4
2096 Female, age 85, both hemispheres 43.1
2071 Male, age 76, both hemispheres 41.7
Nucleus cuneatus
nTPM: 41.5
2562 Male, age 61, both hemispheres 47.5
2100 Male, age 76, both hemispheres 44.3
2805 Female, age 91, both hemispheres 43.9
2131 Male, age 76, both hemispheres 41.1
2376 Male, age 61, both hemispheres 40.6
2808 Female, age 85, both hemispheres 40.4
2380 Male, age 80, both hemispheres 39.6
2564 Male, age 74, both hemispheres 38.9
2381 Male, age 80, both hemispheres 37.2
Nucleus gracilis
nTPM: 40.0
2299 Female, age 85, both hemispheres 41.3
2382 Male, age 80, both hemispheres 41.0
2627 Male, age 74, both hemispheres 37.6
Nucleus raphe magnus
nTPM: 32.6
2459 Female, age 91, both hemispheres 37.0
2328 Male, age 80, both hemispheres 34.2
2455 Male, age 74, both hemispheres 32.8
2051 Male, age 76, both hemispheres 31.5
2172 Female, age 85, both hemispheres 30.2
2160 Male, age 61, both hemispheres 29.6
Nucleus raphe obscurus
nTPM: 42.2
2142 Male, age 76, midline 52.5
2800 Male, age 61, midline 38.7
2845 Female, age 85, midline 35.4
Nucleus raphe pallidus
nTPM: 40.2
2145 Male, age 76, midline 46.3
2183 Male, age 80, midline 39.3
1924 Male, age 61, midline 35.0
Nucleus tractus solitarii
nTPM: 44.5
2191 Female, age 85, both hemispheres 47.6
2656 Male, age 76, both hemispheres 46.4
2307 Male, age 80, both hemispheres 45.6
2144 Female, age 91, right hemisphere 38.5
Paramedian reticular nucleus
nTPM: 36.8
2057 Male, age 80, both hemispheres 39.9
2313 Male, age 61, both hemispheres 38.9
2052 Male, age 76, both hemispheres 36.1
2050 Female, age 85, both hemispheres 32.3
Parvicellular reticular nuclei
nTPM: 39.1
2119 Male, age 80, both hemispheres 43.1
2095 Male, age 76, both hemispheres 40.1
2558 Male, age 74, both hemispheres 34.2
Parvicellular reticular nuclei, medullary
nTPM: 38.7
2181 Male, age 80, left hemisphere 41.0
2091 Female, age 85, both hemispheres 37.6
2189 Female, age 91, both hemispheres 37.5
Pedunculopontine tegmental nucleus
nTPM: 42.7
1921 Female, age 85, both hemispheres 43.0
2338 Male, age 61, both hemispheres 43.0
2334 Male, age 80, both hemispheres 42.1
Peritrigeminal nucleus
nTPM: 38.0
2067 Female, age 85, both hemispheres 38.1
2136 Male, age 76, both hemispheres 38.1
2179 Male, age 61, both hemispheres 37.8
Pontine nuclei
nTPM: 33.9
2115 Male, age 80, left hemisphere 43.6
2319 Female, age 91, both hemispheres 38.8
2454 Male, age 74, left hemisphere 36.3
2109 Female, age 72, unknown 34.6
2787 Female, age 85, both hemispheres 31.6
1968 Male, age 76, left hemisphere 31.0
1863 Male, age 55, unknown 28.9
2727 Male, age 61, right hemisphere 26.5
Pontine raphe nucleus
nTPM: 40.9
2853 Male, age 76, midline 44.3
2122 Female, age 85, midline 37.5
Posteroventral cochlear nucleus
nTPM: 42.6
2371 Male, age 61, both hemispheres 47.3
2135 Female, age 91, both hemispheres 46.8
2341 Male, age 80, both hemispheres 44.1
2752 Female, age 85, both hemispheres 39.0
2070 Male, age 76, both hemispheres 36.0
Prepositus hypoglossal nucleus
nTPM: 39.6
2086 Male, age 80, both hemispheres 43.9
2855 Female, age 85, right hemisphere 35.3
Principal sensory trigeminal nucleus
nTPM: 34.4
2367 Female, age 91, left hemisphere 38.0
2324 Male, age 76, both hemispheres 36.8
2158 Male, age 61, both hemispheres 31.6
2008 Male, age 80, left hemisphere 31.3
Reticular pontine nucleus, caudal
nTPM: 36.3
2559 Male, age 74, both hemispheres 41.7
2457 Female, age 91, both hemispheres 37.1
2092 Male, age 76, both hemispheres 33.5
2332 Male, age 80, right hemisphere 32.8
Reticular pontine nucleus, oral
nTPM: 36.2
1939 Male, age 80, both hemispheres 40.0
2366 Female, age 91, both hemispheres 39.5
2167 Male, age 76, both hemispheres 37.7
2012 Female, age 85, both hemispheres 35.6
2361 Male, age 74, both hemispheres 28.3
Reticulotegmental nucleus
nTPM: 39.1
2333 Male, age 80, both hemispheres 41.2
2452 Male, age 74, both hemispheres 39.2
2322 Female, age 91, both hemispheres 39.0
2325 Male, age 76, both hemispheres 37.0
Spinal trigeminal nucleus, caudal
nTPM: 38.0
2308 Male, age 80, both hemispheres 41.1
2312 Male, age 61, both hemispheres 40.5
2642 Male, age 74, both hemispheres 38.2
2447 Male, age 76, both hemispheres 35.8
2390 Female, age 91, both hemispheres 34.5
Spinal trigeminal nucleus, interpolar
nTPM: 35.0
2625 Male, age 61, both hemispheres 40.7
2389 Female, age 91, both hemispheres 37.4
2033 Male, age 80, both hemispheres 35.9
2386 Female, age 85, both hemispheres 33.1
2066 Male, age 76, right hemisphere 28.1
Spinal trigeminal nucleus, oral
nTPM: 38.6
2164 Male, age 80, both hemispheres 42.2
2737 Female, age 85, both hemispheres 36.8
1978 Male, age 76, both hemispheres 36.7
Spinal vestibular nucleus
nTPM: 37.0
2780 Male, age 80, both hemispheres 38.2
2796 Male, age 61, both hemispheres 38.0
2186 Female, age 91, both hemispheres 37.8
2384 Male, age 74, both hemispheres 37.1
2748 Male, age 76, both hemispheres 36.2
2806 Female, age 85, both hemispheres 34.5
Subcoeruleus area
nTPM: 39.3
2451 Male, age 74, both hemispheres 44.1
2369 Female, age 85, left hemisphere 41.2
1958 Male, age 80, both hemispheres 37.6
2323 Female, age 91, left hemisphere 37.6
2089 Male, age 76, left hemisphere 36.1
Superior olive
nTPM: 34.7
2329 Male, age 80, right hemisphere 37.0
2561 Female, age 91, both hemispheres 36.7
2364 Male, age 74, right hemisphere 35.7
2020 Male, age 76, both hemispheres 33.8
1875 Female, age 85, both hemispheres 30.1
Superior vestibular nucleus
nTPM: 38.9
2061 Male, age 76, both hemispheres 43.4
2015 Male, age 80, both hemispheres 36.8
2383 Male, age 74, both hemispheres 36.7
Ventral medullary reticular nucleus
nTPM: 39.2
2372 Male, age 61, both hemispheres 41.0
2060 Male, age 76, both hemispheres 37.4
Ventral periolivary nuclei
nTPM: 33.2
2794 Female, age 91, left hemisphere 35.5
2023 Male, age 76, both hemispheres 33.8
2130 Female, age 85, both hemispheres 31.9
2165 Male, age 80, both hemispheres 31.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 38.4
2118 Male, age 80, both hemispheres 42.8
2302 Female, age 91, both hemispheres 39.0
2180 Male, age 61, both hemispheres 38.4
2741 Female, age 85, both hemispheres 36.6
1986 Male, age 76, both hemispheres 35.3
Ventrolateral tegmental area, A5 NE cell group
nTPM: 37.5
2359 Male, age 61, both hemispheres 48.1
2456 Female, age 91, both hemispheres 39.3
2161 Male, age 80, both hemispheres 36.3
1959 Male, age 76, both hemispheres 34.0
2449 Male, age 74, both hemispheres 33.9
2840 Female, age 85, both hemispheres 33.1

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 23.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 21.6
FF:10165-103B3 76 years, female 21.8
FF:10182-103D2 60 years, female 21.4
Medulla oblongata
Scaled Tags Per Million: 23.1
FF:10155-103A2 76 years, female 25.1
FF:10174-103C3 60 years, female 22.9
FF:10038-101F2 18-64 years, mixed 21.3
Pons
Scaled Tags Per Million: 18.5
FF:10033-101E6 18-54 years, mixed 18.5

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 25.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 25.7
Samples: 4

Max nTPM: 27.5
Min nTPM: 24.7
Sample A Female 27.5
Sample B Female 25.5
Sample C Male 25.2
Sample D Male 24.7
Pons
nTPM: 25.0
Samples: 4

Max nTPM: 27.5
Min nTPM: 22.7
Sample A Female 22.7
Sample B Female 27.5
Sample C Male 26.5
Sample D Male 23.3

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 26.1
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 26.1
Samples: 4

Max nTPM: 27.1
Min nTPM: 24.8
Sample A Male 27.1
Sample B Male 24.8
Sample C Female 26.7
Sample D Female 25.7

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 2.3
70615583 Antisense, RP_050725_01_D01, Mouse strain C57BL/6J (56 days, male) 4.3
532733 Antisense, RP_040825_01_H07, Mouse strain C57BL/6J (56 days, male) 0.3
Pons
Expression energy: 2.2
70615583 Antisense, RP_050725_01_D01, Mouse strain C57BL/6J (56 days, male) 4.1
532733 Antisense, RP_040825_01_H07, Mouse strain C57BL/6J (56 days, male) 0.2

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