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CCDC85B
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  • CCDC85B
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:121.5 nTPM
FANTOM5:135.5 Scaled Tags Per Million
Pig:125.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA054415
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

121.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 121.5
Samples: 246

Max nTPM: 380.8
Min nTPM: 31.8
Std nTPM: 54.4
Median nTPM: 115.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 380.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 349.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 320.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 301.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 284.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 274.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 242.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 232.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 231.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 227.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 227.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 223.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 222.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 222.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 205.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 204.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 203.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 202.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 199.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 199.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 191.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 190.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 188.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 186.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 185.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 185.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 183.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 179.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 175.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 173.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 172.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 170.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 169.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 167.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 167.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 166.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 165.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 165.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 165.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 164.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 164.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 163.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 162.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 161.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 160.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 160.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 158.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 158.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 157.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 157.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 155.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 155.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 154.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 154.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 152.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 151.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 150.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 150.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 150.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 149.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 148.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 148.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 146.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 144.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 144.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 143.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 142.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 140.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 140.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 139.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 138.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 138.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 138.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 137.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 136.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 136.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 136.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 135.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 135.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 135.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 134.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 134.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 133.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 133.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 132.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 132.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 132.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 131.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 131.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 131.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 130.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 130.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 130.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 129.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 129.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 128.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 128.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 128.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 126.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 126.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 126.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 124.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 124.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 124.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 124.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 124.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 123.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 121.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 121.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 120.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 120.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 119.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 119.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 118.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 118.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 118.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 117.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 117.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 117.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 116.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 116.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 115.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 115.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 115.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 114.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 113.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 112.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 112.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 112.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 112.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 111.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 111.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 111.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 111.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 111.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 110.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 110.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 109.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 109.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 109.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 108.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 107.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 107.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 106.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 106.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 106.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 105.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 105.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 105.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 105.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 105.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 104.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 104.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 104.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 104.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 103.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 102.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 102.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 102.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 102.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 102.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 100.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 98.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 98.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 97.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 97.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 97.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 97.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 96.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 96.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 96.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 95.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 95.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 94.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 92.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 92.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 91.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 91.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 91.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 91.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 89.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 89.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 87.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 87.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 86.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 86.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 86.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 85.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 85.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 84.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 82.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 82.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 81.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 80.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 80.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 80.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 79.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 78.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 78.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 78.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 75.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 74.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 72.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 72.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 72.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 71.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 71.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 70.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 70.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 70.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 68.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 66.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 66.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 65.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 64.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 62.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 62.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 61.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 61.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 60.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 56.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 54.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 52.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 52.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 51.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 51.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 51.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 49.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 49.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 48.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 48.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 48.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 48.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 45.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 45.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 42.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 41.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 41.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 40.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 38.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 35.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 35.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 34.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 33.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 32.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 31.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

135.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 135.5
FF:10164-103B2 76 years, female 135.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.2
Pig sample Sample description nTPM
Caudate
nTPM: 125.2
Samples: 4

Max nTPM: 146.3
Min nTPM: 99.4
Sample A Female 99.4
Sample B Female 140.2
Sample C Male 146.3
Sample D Male 114.7

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