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  • GNG7
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Neuronal projections: Not detected
Synapses: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:423.5 nTPM
FANTOM5:408.4 Scaled Tags Per Million
Pig:493.7 nTPM

CAUDATE - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA057790
Glial cells Not detected
Neuronal cells Not detected
Neuronal projections High
Synapses Not detected

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA057790
Glial cells Low
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

423.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 423.5
Samples: 246

Max nTPM: 957.9
Min nTPM: 33.5
Std nTPM: 182.6
Median nTPM: 423.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 957.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 896.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 862.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 861.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 842.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 817.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 797.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 793.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 782.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 778.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 763.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 746.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 746.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 723.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 721.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 715.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 699.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 691.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 680.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 676.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 670.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 663.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 663.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 661.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 660.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 657.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 656.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 651.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 647.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 643.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 632.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 632.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 632.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 631.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 625.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 625.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 622.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 614.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 613.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 612.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 606.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 600.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 582.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 578.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 578.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 577.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 576.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 574.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 571.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 571.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 568.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 565.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 562.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 559.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 558.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 558.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 555.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 552.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 547.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 547.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 546.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 545.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 544.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 542.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 541.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 540.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 538.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 534.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 532.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 531.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 531.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 527.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 525.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 524.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 521.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 512.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 511.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 509.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 505.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 505.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 504.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 504.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 504.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 503.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 502.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 501.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 495.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 495.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 494.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 487.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 487.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 486.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 483.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 478.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 476.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 476.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 475.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 473.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 471.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 471.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 469.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 466.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 461.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 460.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 458.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 454.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 449.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 448.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 448.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 446.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 445.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 443.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 443.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 439.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 438.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 437.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 437.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 436.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 436.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 435.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 429.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 423.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 423.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 423.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 422.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 420.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 418.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 417.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 416.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 415.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 415.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 414.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 413.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 410.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 408.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 405.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 404.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 401.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 400.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 400.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 399.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 392.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 385.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 384.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 382.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 374.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 373.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 372.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 370.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 364.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 361.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 360.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 360.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 358.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 358.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 354.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 352.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 350.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 339.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 338.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 337.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 336.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 335.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 335.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 335.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 331.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 327.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 325.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 323.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 319.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 317.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 313.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 313.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 303.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 302.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 300.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 300.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 299.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 298.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 297.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 286.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 286.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 285.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 283.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 282.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 281.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 278.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 276.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 273.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 273.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 272.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 269.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 261.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 254.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 254.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 249.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 246.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 244.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 244.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 243.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 235.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 235.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 230.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 229.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 228.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 226.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 220.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 218.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 217.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 215.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 208.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 204.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 203.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 203.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 203.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 202.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 201.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 197.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 193.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 190.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 186.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 183.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 179.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 174.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 173.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 172.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 171.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 170.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 168.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 168.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 166.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 165.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 156.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 135.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 133.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 125.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 125.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 125.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 121.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 95.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 93.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 88.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 84.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 76.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 62.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 33.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

408.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 408.4
FF:10164-103B2 76 years, female 408.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

493.7
Pig sample Sample description nTPM
Caudate
nTPM: 493.7
Samples: 4

Max nTPM: 625.1
Min nTPM: 341.8
Sample A Female 341.8
Sample B Female 521.4
Sample C Male 625.1
Sample D Male 486.5

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