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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:221.7 nTPM
FANTOM5:188.6 Scaled Tags Per Million
Pig:103.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA027526
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

221.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 221.7
Samples: 246

Max nTPM: 473.1
Min nTPM: 112.1
Std nTPM: 65.4
Median nTPM: 211.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 473.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 466.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 454.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 447.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 438.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 431.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 428.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 395.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 377.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 375.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 367.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 355.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 349.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 330.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 326.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 326.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 326.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 321.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 303.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 302.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 301.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 301.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 297.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 296.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 295.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 294.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 292.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 289.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 289.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 288.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 286.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 286.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 283.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 281.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 279.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 277.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 277.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 275.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 275.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 272.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 271.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 270.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 268.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 267.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 267.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 266.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 266.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 266.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 263.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 261.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 258.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 258.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 258.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 256.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 256.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 255.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 254.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 253.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 253.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 252.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 251.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 251.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 250.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 249.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 248.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 248.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 247.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 245.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 245.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 244.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 244.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 243.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 242.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 242.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 241.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 241.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 240.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 240.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 240.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 240.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 239.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 238.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 238.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 237.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 237.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 236.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 236.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 236.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 235.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 234.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 233.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 231.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 230.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 230.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 229.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 229.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 229.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 228.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 227.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 227.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 227.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 225.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 225.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 224.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 222.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 222.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 221.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 220.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 220.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 220.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 220.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 220.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 220.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 219.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 218.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 217.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 217.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 215.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 214.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 214.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 211.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 211.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 211.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 210.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 210.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 210.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 210.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 209.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 209.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 207.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 207.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 206.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 205.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 205.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 203.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 203.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 202.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 202.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 201.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 201.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 201.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 200.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 200.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 199.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 198.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 198.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 198.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 198.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 197.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 197.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 196.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 194.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 194.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 193.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 192.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 192.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 192.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 192.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 191.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 191.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 190.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 189.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 189.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 188.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 188.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 187.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 187.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 187.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 186.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 185.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 184.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 184.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 182.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 182.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 182.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 182.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 181.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 181.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 181.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 180.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 179.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 178.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 177.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 176.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 175.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 174.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 173.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 173.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 172.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 171.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 171.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 171.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 170.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 168.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 167.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 166.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 165.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 165.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 164.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 164.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 164.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 164.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 164.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 163.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 162.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 162.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 160.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 160.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 160.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 160.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 160.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 160.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 159.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 159.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 158.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 158.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 158.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 157.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 156.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 155.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 155.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 155.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 153.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 151.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 151.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 151.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 149.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 149.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 147.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 147.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 146.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 143.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 142.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 136.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 136.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 135.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 133.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 132.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 130.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 129.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 122.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 120.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 119.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 119.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 114.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 112.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

188.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 188.6
FF:10164-103B2 76 years, female 188.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.1
Pig sample Sample description nTPM
Caudate
nTPM: 103.1
Samples: 4

Max nTPM: 133.2
Min nTPM: 86.9
Sample A Female 92.9
Sample B Female 99.3
Sample C Male 133.2
Sample D Male 86.9

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