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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:74.2 nTPM
FANTOM5:125.3 Scaled Tags Per Million
Pig:25.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA018991Antibody HPA024087Antibody CAB075730Antibody CAB075731
Glial cells LowNot detectedMediumHigh
Neuronal cells LowNot detectedMediumHigh








CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 74.2
Samples: 246

Max nTPM: 171.2
Min nTPM: 34.1
Std nTPM: 18.4
Median nTPM: 70.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 171.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 148.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 141.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 127.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 121.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 120.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 117.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 114.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 114.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 110.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 110.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 109.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 109.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 107.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 107.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 106.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 105.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 102.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 102.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 101.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 100.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 99.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 99.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 98.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 98.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 97.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 96.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 94.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 94.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 93.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 93.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 93.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 93.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 92.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 92.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 91.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 91.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 90.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 90.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 90.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 89.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 89.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 88.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 87.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 87.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 87.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 85.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 85.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 85.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 85.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 85.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 84.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 84.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 84.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 84.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 84.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 83.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 82.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 82.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 82.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 82.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 81.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 81.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 81.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 81.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 80.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 80.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 80.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 80.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 80.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 80.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 79.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 79.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 79.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 79.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 79.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 78.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 78.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 78.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 78.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 78.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 78.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 78.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 77.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 77.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 76.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 76.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 76.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 76.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 76.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 76.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 76.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 76.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 75.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 75.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 75.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 75.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 75.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 75.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 74.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 74.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 74.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 74.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 74.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 73.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 73.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 73.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 73.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 73.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 73.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 72.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 72.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 72.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 72.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 71.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 71.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 71.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 71.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 71.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 71.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 70.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 70.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 70.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 70.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 70.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 70.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 69.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 69.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 69.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 69.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 69.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 69.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 69.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 68.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 68.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 68.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 68.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 68.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 68.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 68.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 68.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 67.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 67.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 67.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 67.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 67.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 67.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 67.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 66.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 66.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 66.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 66.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 66.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 66.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 66.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 66.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 66.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 65.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 65.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 65.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 65.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 65.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 65.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 64.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 64.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 64.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 64.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 64.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 64.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 64.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 64.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 63.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 63.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 63.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 63.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 63.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 63.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 63.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 63.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 63.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 63.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 63.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 63.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 63.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 62.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 62.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 62.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 62.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 62.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 62.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 61.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 61.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 61.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 61.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 61.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 61.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 60.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 60.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 60.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 60.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 60.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 60.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 60.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 60.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 59.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 59.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 59.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 59.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 59.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 58.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 58.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 58.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 58.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 57.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 57.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 57.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 57.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 56.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 55.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 55.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 55.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 55.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 55.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 54.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 54.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 54.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 54.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 53.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 53.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 53.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 53.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 52.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 52.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 52.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 51.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 50.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 50.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 47.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 46.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 45.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 44.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 44.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 42.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 40.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 37.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 34.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

125.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 125.3
FF:10164-103B2 76 years, female 125.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.9
Pig sample Sample description nTPM
Caudate
nTPM: 25.9
Samples: 4

Max nTPM: 30.8
Min nTPM: 22.3
Sample A Female 24.0
Sample B Female 26.5
Sample C Male 30.8
Sample D Male 22.3

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