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  • DPM3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:79.1 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:125.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA014667
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 79.1
Samples: 246

Max nTPM: 172.3
Min nTPM: 26.6
Std nTPM: 20.9
Median nTPM: 75.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 172.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 171.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 145.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 142.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 139.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 138.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 133.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 127.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 126.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 125.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 122.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 121.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 120.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 116.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 116.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 112.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 112.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 111.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 110.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 109.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 107.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 105.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 105.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 105.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 103.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 102.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 102.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 102.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 101.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 101.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 99.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 99.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 98.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 98.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 98.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 97.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 97.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 97.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 97.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 94.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 94.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 94.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 94.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 93.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 93.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 93.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 92.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 92.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 91.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 91.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 91.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 91.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 91.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 91.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 90.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 90.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 90.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 90.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 89.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 88.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 88.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 88.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 88.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 88.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 88.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 87.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 87.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 86.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 86.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 86.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 86.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 85.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 85.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 84.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 84.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 84.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 84.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 83.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 83.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 83.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 83.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 83.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 82.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 82.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 82.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 81.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 81.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 81.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 81.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 81.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 80.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 80.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 80.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 80.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 79.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 79.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 79.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 79.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 79.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 79.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 78.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 78.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 78.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 78.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 78.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 78.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 78.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 78.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 78.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 78.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 77.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 77.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 77.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 77.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 77.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 77.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 76.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 76.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 76.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 76.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 76.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 76.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 75.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 75.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 75.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 75.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 75.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 75.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 74.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 74.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 74.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 74.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 74.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 74.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 74.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 74.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 74.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 74.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 73.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 73.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 73.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 72.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 72.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 72.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 72.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 72.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 71.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 71.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 71.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 71.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 71.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 71.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 71.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 71.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 71.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 70.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 70.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 70.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 70.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 70.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 70.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 70.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 70.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 70.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 69.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 69.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 69.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 69.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 69.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 69.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 69.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 69.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 69.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 68.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 68.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 68.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 67.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 67.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 67.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 67.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 67.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 67.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 67.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 66.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 66.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 66.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 66.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 66.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 66.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 65.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 64.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 64.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 64.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 64.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 64.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 64.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 64.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 63.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 63.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 63.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 63.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 63.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 62.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 62.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 62.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 62.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 62.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 62.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 61.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 61.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 61.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 60.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 60.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 60.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 59.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 59.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 59.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 58.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 57.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 57.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 56.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 56.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 56.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 55.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 55.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 55.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 55.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 54.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 54.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 54.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 54.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 53.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 53.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 52.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 51.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 50.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 50.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 50.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 49.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 48.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 43.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 42.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 38.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 36.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 33.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 26.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.0
FF:10164-103B2 76 years, female 18.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.0
Pig sample Sample description nTPM
Caudate
nTPM: 125.0
Samples: 4

Max nTPM: 140.9
Min nTPM: 111.4
Sample A Female 117.2
Sample B Female 130.5
Sample C Male 140.9
Sample D Male 111.4

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