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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:417.3 nTPM
FANTOM5:221.8 Scaled Tags Per Million
Pig:123.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA029507
Glial cells Medium
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

417.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 417.3
Samples: 246

Max nTPM: 2601.0
Min nTPM: 89.1
Std nTPM: 326.2
Median nTPM: 317.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2601.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 2018.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1785.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1563.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1453.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1342.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1261.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1250.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1240.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1231.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1187.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1086.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1018.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1017.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 994.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 964.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 959.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 927.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 924.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 826.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 821.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 790.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 788.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 783.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 772.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 757.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 730.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 725.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 723.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 707.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 694.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 690.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 683.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 666.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 649.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 628.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 625.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 621.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 617.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 610.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 596.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 594.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 589.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 588.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 581.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 577.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 564.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 563.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 563.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 557.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 554.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 544.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 544.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 528.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 526.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 524.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 522.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 521.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 505.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 497.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 495.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 493.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 492.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 484.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 480.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 477.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 472.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 466.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 458.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 454.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 453.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 451.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 447.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 447.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 443.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 441.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 437.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 435.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 435.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 432.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 431.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 431.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 428.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 424.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 423.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 416.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 414.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 413.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 413.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 409.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 406.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 405.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 394.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 393.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 390.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 384.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 382.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 382.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 379.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 375.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 374.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 374.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 372.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 364.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 363.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 355.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 354.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 353.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 347.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 344.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 343.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 339.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 334.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 332.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 332.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 330.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 328.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 327.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 327.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 326.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 322.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 322.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 318.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 316.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 316.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 315.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 312.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 303.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 303.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 303.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 302.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 302.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 300.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 300.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 300.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 298.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 297.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 295.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 293.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 290.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 289.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 286.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 285.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 284.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 281.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 276.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 274.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 271.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 269.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 269.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 268.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 268.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 266.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 261.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 261.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 259.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 257.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 257.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 255.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 250.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 246.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 244.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 243.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 241.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 240.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 240.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 239.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 237.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 237.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 236.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 235.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 228.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 224.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 223.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 223.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 223.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 222.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 221.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 217.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 216.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 216.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 216.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 215.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 214.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 214.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 213.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 213.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 213.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 210.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 209.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 207.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 206.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 206.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 204.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 203.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 202.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 197.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 194.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 194.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 194.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 193.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 193.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 193.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 190.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 190.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 188.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 187.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 185.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 184.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 182.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 181.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 179.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 177.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 176.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 176.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 175.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 174.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 173.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 169.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 169.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 169.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 169.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 167.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 161.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 159.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 159.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 157.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 153.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 152.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 148.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 144.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 144.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 144.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 143.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 141.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 140.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 138.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 135.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 135.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 133.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 133.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 130.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 121.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 109.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 108.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 89.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

221.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 221.8
FF:10164-103B2 76 years, female 221.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.3
Pig sample Sample description nTPM
Caudate
nTPM: 123.3
Samples: 4

Max nTPM: 139.6
Min nTPM: 106.6
Sample A Female 122.9
Sample B Female 106.6
Sample C Male 139.6
Sample D Male 124.1

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