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PJA1
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  • PJA1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:45.9 nTPM
FANTOM5:102.0 Scaled Tags Per Million
Pig:54.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA000595
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.9
Samples: 246

Max nTPM: 93.4
Min nTPM: 16.4
Std nTPM: 12.8
Median nTPM: 45.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 93.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 85.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 74.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 74.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 73.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 73.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 73.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 72.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 70.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 70.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 69.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 68.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 68.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 68.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 68.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 68.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 68.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 67.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 66.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 64.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 64.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 64.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 63.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 63.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 63.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 63.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 62.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 62.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 62.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 62.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 62.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 62.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 61.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 61.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 61.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 60.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 60.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 60.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 60.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 59.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 59.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 58.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 58.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 58.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 58.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 58.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 57.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 57.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 56.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 56.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 56.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 55.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 55.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 55.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 55.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 54.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 54.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 54.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 54.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 54.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 54.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 53.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 53.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 53.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 53.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 52.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 52.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 52.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 52.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 52.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 52.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 51.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 51.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 51.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 51.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 50.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 50.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 50.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 50.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 50.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 49.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 49.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 49.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 49.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 49.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 49.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 49.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 49.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 48.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 48.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 48.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 48.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 48.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 48.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 48.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 47.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 47.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 47.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 47.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 47.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 46.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 46.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 46.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 46.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 46.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 46.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 46.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 46.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 46.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 46.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 46.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 45.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 45.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 45.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 45.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 45.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 45.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 45.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 45.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 45.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 45.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 45.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 45.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 45.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 44.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 44.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 44.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 43.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 43.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 43.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 43.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 43.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 43.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 43.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 43.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 43.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 43.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 42.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 42.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 42.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 42.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 42.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 42.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 42.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 42.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 42.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 42.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 41.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 41.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 41.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 41.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 41.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 41.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 41.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 41.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 41.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 40.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 40.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 40.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 40.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 40.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 40.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 40.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 39.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 39.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 39.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 39.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 39.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 39.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 39.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 39.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 38.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 38.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 38.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 38.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 38.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 38.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 37.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 37.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 37.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 37.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 37.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 37.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 36.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 36.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 36.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 36.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 36.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 36.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 36.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 36.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 36.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 35.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 35.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 35.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 35.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 35.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 35.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 35.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 34.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 34.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 34.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 34.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 34.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 34.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 33.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 33.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 33.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 33.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 33.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 33.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 33.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 32.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 32.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 31.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 31.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 31.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 31.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 31.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 30.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 30.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 30.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 29.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 29.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 28.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 28.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 28.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 28.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 28.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 27.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 27.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 27.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 27.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 27.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 26.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 26.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 26.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 26.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 24.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 24.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 24.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 23.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 21.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 19.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 18.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 16.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

102.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 102.0
FF:10164-103B2 76 years, female 102.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.8
Pig sample Sample description nTPM
Caudate
nTPM: 54.9
Samples: 4

Max nTPM: 63.6
Min nTPM: 48.6
Sample A Female 53.8
Sample B Female 53.4
Sample C Male 63.6
Sample D Male 48.6

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