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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:147.4 nTPM
FANTOM5:27.5 Scaled Tags Per Million
Pig:277.5 nTPM

CAUDATE - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA060952
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 147.4
Samples: 246

Max nTPM: 510.3
Min nTPM: 4.3
Std nTPM: 85.1
Median nTPM: 135.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 510.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 403.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 368.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 367.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 363.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 345.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 338.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 323.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 320.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 312.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 309.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 308.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 306.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 300.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 299.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 296.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 292.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 282.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 282.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 278.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 275.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 273.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 264.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 263.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 263.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 259.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 258.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 253.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 252.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 251.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 250.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 240.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 238.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 238.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 237.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 235.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 234.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 234.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 229.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 229.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 229.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 229.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 228.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 224.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 223.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 222.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 222.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 219.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 218.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 217.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 215.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 215.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 215.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 214.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 213.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 212.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 210.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 209.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 208.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 207.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 206.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 205.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 204.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 204.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 203.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 200.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 198.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 195.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 193.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 193.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 193.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 193.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 192.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 191.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 188.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 187.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 186.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 184.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 183.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 181.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 178.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 177.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 177.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 176.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 174.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 172.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 168.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 164.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 164.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 163.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 162.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 162.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 161.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 161.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 160.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 159.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 158.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 156.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 155.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 155.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 153.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 150.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 149.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 147.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 146.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 146.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 145.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 145.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 145.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 144.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 144.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 143.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 142.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 140.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 139.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 138.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 137.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 137.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 137.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 137.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 136.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 136.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 135.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 135.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 134.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 134.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 134.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 132.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 131.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 130.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 130.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 129.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 127.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 126.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 125.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 124.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 124.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 122.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 119.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 119.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 118.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 118.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 116.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 115.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 115.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 115.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 114.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 113.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 113.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 112.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 111.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 111.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 110.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 109.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 108.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 107.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 107.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 105.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 104.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 103.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 103.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 101.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 99.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 99.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 98.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 98.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 96.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 96.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 92.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 91.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 91.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 91.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 89.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 87.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 87.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 86.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 85.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 85.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 85.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 84.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 83.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 83.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 80.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 78.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 77.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 77.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 76.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 76.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 75.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 75.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 73.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 73.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 70.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 70.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 68.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 68.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 68.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 67.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 66.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 64.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 64.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 62.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 62.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 62.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 62.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 61.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 61.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 61.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 60.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 60.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 59.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 59.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 59.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 58.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 57.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 56.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 56.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 55.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 54.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 52.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 50.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 46.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 46.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 45.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 45.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 45.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 45.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 43.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 42.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 41.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 38.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 37.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 37.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 36.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 35.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 35.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 30.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 29.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 26.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 26.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 23.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 23.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 23.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 18.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 17.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 4.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

27.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.5
FF:10164-103B2 76 years, female 27.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

277.5
Pig sample Sample description nTPM
Caudate
nTPM: 277.5
Samples: 4

Max nTPM: 327.9
Min nTPM: 211.0
Sample A Female 211.0
Sample B Female 306.7
Sample C Male 327.9
Sample D Male 264.5

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