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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:268.6 nTPM
GTEx:187.1 nTPM
FANTOM5:24.5 Scaled Tags Per Million

HIPPOCAMPUS - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA060952
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

268.6
Sample id Sample description nTPM
Hippocampus
nTPM: 268.6
2621 Female, age 67, right hemisphere 381.3
2529 Female, age 94, left hemisphere 364.5
1911 Female, age 85, right hemisphere 343.6
2148 Female, age 91, left hemisphere 250.0
1898 Male, age 80, left hemisphere 156.8
1855 Male, age 76, left hemisphere 115.2

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

187.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 187.1
Samples: 197

Max nTPM: 917.5
Min nTPM: 5.2
Std nTPM: 159.2
Median nTPM: 143.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 917.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 766.5
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 730.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 712.6
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 648.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 600.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 585.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 564.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 538.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 509.9
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 465.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 464.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 443.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 443.2
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 440.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 440.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 426.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 414.8
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 398.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 395.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 385.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 385.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 364.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 356.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 355.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 345.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 342.2
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 335.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 334.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 333.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 329.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 323.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 323.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 323.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 312.9
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 309.6
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 308.5
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 308.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 305.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 296.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 295.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 290.2
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 281.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 274.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 272.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 270.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 268.8
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 266.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 264.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 255.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 251.3
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 247.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 241.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 239.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 233.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 230.4
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 227.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 227.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 227.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 226.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 226.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 226.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 221.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 218.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 218.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 218.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 217.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 214.9
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 214.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 213.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 213.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 199.4
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 198.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 197.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 191.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 189.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 188.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 184.2
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 183.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 183.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 183.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 181.5
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 180.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 174.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 171.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 170.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 166.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 166.4
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 166.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 165.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 157.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 155.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 154.6
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 153.7
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 147.6
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 144.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 144.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 143.8
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 143.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 142.7
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 142.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 141.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 141.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 140.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 137.6
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 134.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 134.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 131.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 129.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 129.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 124.1
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 121.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 121.5
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 121.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 121.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 119.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 116.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 110.9
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 110.8
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 110.3
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 109.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 107.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 106.1
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 104.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 101.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 96.0
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 95.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 95.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 94.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 92.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 89.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 88.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 87.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 86.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 82.8
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 81.9
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 81.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 79.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 78.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 76.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 74.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 74.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 74.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 74.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 73.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 71.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 70.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 68.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 66.7
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 66.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 66.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 63.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 63.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 61.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 61.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 61.2
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 60.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 54.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 54.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 53.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 52.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 52.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 50.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 50.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 50.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 50.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 48.7
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 48.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 47.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 46.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 42.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 41.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 40.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 39.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 39.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 38.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 38.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 33.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 28.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 27.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 26.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 25.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 24.8
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 24.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 23.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 23.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 20.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 20.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 20.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 14.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 12.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 11.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 11.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 9.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 8.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 6.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 5.2
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 24.5
FF:10169-103B7 60 years, female 25.9
FF:10153-102I9 76 years, female 23.0

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