PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:43.5 nTPM
FANTOM5:36.5 Scaled Tags Per Million
Pig:14.7 nTPM
Mouse:13.1 nTPM
Allen mouse:4.0 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 43.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 30.8
2188 Female, age 91, both hemispheres 33.8
2301 Female, age 85, both hemispheres 31.2
1984 Male, age 76, both hemispheres 30.8
2090 Male, age 80, both hemispheres 27.6
Area postrema
nTPM: 37.7
2054 Male, age 76, both hemispheres 39.0
2799 Male, age 61, both hemispheres 37.6
2306 Male, age 80, both hemispheres 36.5
Dorsal cochlear nucleus
nTPM: 32.4
2802 Male, age 74, right hemisphere 42.4
2187 Female, age 91, both hemispheres 34.6
2378 Male, age 80, both hemispheres 31.7
2058 Male, age 76, both hemispheres 28.1
2370 Male, age 61, both hemispheres 25.1
Dorsal medullary reticular nucleus
nTPM: 31.0
2040 Female, age 85, both hemispheres 33.3
2373 Male, age 61, both hemispheres 32.3
2088 Male, age 76, both hemispheres 27.4
Dorsal motor vagal complex
nTPM: 41.0
2643 Male, age 74, both hemispheres 52.7
2813 Female, age 72, unknown 47.5
2797 Male, age 61, both hemispheres 41.8
2844 Male, age 55, unknown 41.6
2133 Female, age 91, both hemispheres 37.8
2185 Male, age 76, both hemispheres 36.3
2807 Female, age 85, both hemispheres 35.7
2000 Male, age 74, unknown 34.7
Dorsal tegmental nucleus
nTPM: 31.1
2326 Male, age 74, both hemispheres 35.9
2083 Male, age 80, both hemispheres 31.0
2358 Male, age 61, both hemispheres 30.3
1936 Male, age 76, left hemisphere 27.1
Dorsolateral tegmental area
nTPM: 35.6
2141 Male, age 76, both hemispheres 44.6
2337 Male, age 61, both hemispheres 43.8
2360 Male, age 74, both hemispheres 33.6
2654 Male, age 80, both hemispheres 31.8
2751 Female, age 85, both hemispheres 24.3
Gigantocellular reticular nuclei, medullary
nTPM: 30.8
2387 Female, age 91, both hemispheres 36.4
2314 Male, age 61, both hemispheres 35.6
1876 Female, age 85, both hemispheres 31.2
2310 Male, age 80, both hemispheres 30.5
2462 Male, age 74, both hemispheres 27.4
2022 Male, age 76, right hemisphere 23.5
Gigantocellular reticular nuclei, pars
nTPM: 33.5
2336 Male, age 61, both hemispheres 38.8
2084 Female, age 85, both hemispheres 34.0
2330 Male, age 80, both hemispheres 32.8
2706 Male, age 80, both hemispheres 31.2
2168 Male, age 76, both hemispheres 30.7
Inferior olive
nTPM: 43.5
2085 Female, age 85, both hemispheres 53.5
2628 Female, age 91, both hemispheres 47.0
2563 Male, age 74, both hemispheres 39.7
2178 Male, age 61, both hemispheres 38.8
2379 Male, age 80, both hemispheres 38.5
Kolliker-Fuse nucleus
nTPM: 34.4
2793 Female, age 91, left hemisphere 35.4
2315 Male, age 76, right hemisphere 34.7
2163 Male, age 80, both hemispheres 33.0
Lateral lemniscal nuclei
nTPM: 29.6
2169 Male, age 76, both hemispheres 33.4
2453 Male, age 74, right hemisphere 33.4
2320 Female, age 91, left hemisphere 30.8
2036 Male, age 80, both hemispheres 27.6
2746 Female, age 85, left hemisphere 22.6
Lateral medullary reticular nucleus
nTPM: 36.9
2374 Male, age 61, both hemispheres 45.6
2804 Female, age 91, both hemispheres 44.3
2190 Female, age 85, both hemispheres 38.3
2852 Male, age 80, both hemispheres 31.8
2305 Male, age 74, both hemispheres 31.2
2044 Male, age 76, both hemispheres 30.1
Lateral parabrachial nucleus
nTPM: 29.5
2792 Male, age 76, both hemispheres 34.1
2139 Female, age 85, right hemisphere 30.2
2013 Male, age 80, both hemispheres 26.8
2790 Male, age 61, both hemispheres 26.7
Lateral vestibular nucleus
nTPM: 33.3
2311 Male, age 80, both hemispheres 35.0
2184 Male, age 76, both hemispheres 31.6
Locus coeruleus
nTPM: 41.3
2720 Male, age 74, both hemispheres 49.7
2788 Male, age 74, unknown 45.4
2014 Male, age 55, unknown 44.0
2317 Female, age 72, unknown 39.9
2162 Male, age 80, both hemispheres 37.9
2123 Female, age 91, both hemispheres 37.4
1980 Male, age 76, both hemispheres 35.1
Medial olivary nucleus
nTPM: 33.3
2138 Female, age 91, both hemispheres 36.9
2851 Male, age 80, both hemispheres 35.2
1943 Male, age 61, both hemispheres 30.9
1962 Male, age 76, both hemispheres 30.1
Medial parabrachial nucleus
nTPM: 30.9
2854 Male, age 80, both hemispheres 39.4
2786 Male, age 76, both hemispheres 33.1
2170 Female, age 91, both hemispheres 29.5
2156 Male, age 61, both hemispheres 26.9
2463 Female, age 85, right hemisphere 25.7
Medial periolivary nuclei
nTPM: 28.5
2458 Female, age 91, both hemispheres 32.1
2063 Male, age 76, both hemispheres 30.3
2791 Male, age 74, right hemisphere 28.4
2171 Female, age 85, both hemispheres 26.2
2081 Male, age 80, both hemispheres 25.6
Medial vestibular nucleus
nTPM: 32.9
2801 Male, age 74, both hemispheres 37.1
2803 Female, age 91, both hemispheres 36.4
2624 Male, age 61, both hemispheres 32.6
2134 Male, age 76, both hemispheres 31.7
2743 Female, age 85, both hemispheres 30.6
2093 Male, age 80, both hemispheres 28.9
Motor facial nucleus
nTPM: 32.6
2795 Female, age 91, both hemispheres 41.2
2327 Male, age 80, both hemispheres 35.5
2126 Male, age 61, both hemispheres 30.8
2062 Male, age 76, both hemispheres 30.0
2365 Male, age 74, right hemisphere 29.2
2697 Female, age 85, both hemispheres 29.1
Motor hypoglossal nucleus
nTPM: 38.5
2461 Male, age 61, both hemispheres 51.6
2277 Male, age 76, both hemispheres 41.2
2125 Female, age 91, both hemispheres 34.7
2132 Female, age 85, both hemispheres 32.9
2182 Male, age 80, both hemispheres 31.9
Motor trigeminal nucleus
nTPM: 28.8
2321 Female, age 91, both hemispheres 32.0
2560 Male, age 74, both hemispheres 29.3
2079 Male, age 80, both hemispheres 28.4
2335 Male, age 61, both hemispheres 28.1
2309 Male, age 76, both hemispheres 25.9
Nuclei of the trapezoid body
nTPM: 27.6
2368 Female, age 91, both hemispheres 32.2
1983 Male, age 76, both hemispheres 28.1
2159 Male, age 61, both hemispheres 27.8
2166 Male, age 80, both hemispheres 27.6
2735 Female, age 85, both hemispheres 22.4
Nucleus ambiguus
nTPM: 34.1
2071 Male, age 76, both hemispheres 39.7
2096 Female, age 85, both hemispheres 28.6
Nucleus cuneatus
nTPM: 31.6
2805 Female, age 91, both hemispheres 39.5
2564 Male, age 74, both hemispheres 36.2
2381 Male, age 80, both hemispheres 31.9
2562 Male, age 61, both hemispheres 31.7
2131 Male, age 76, both hemispheres 30.6
2100 Male, age 76, both hemispheres 29.4
2808 Female, age 85, both hemispheres 29.0
2380 Male, age 80, both hemispheres 28.6
2376 Male, age 61, both hemispheres 27.2
Nucleus gracilis
nTPM: 36.1
2627 Male, age 74, both hemispheres 42.3
2382 Male, age 80, both hemispheres 34.9
2299 Female, age 85, both hemispheres 31.1
Nucleus raphe magnus
nTPM: 29.6
2455 Male, age 74, both hemispheres 32.5
2051 Male, age 76, both hemispheres 30.4
2328 Male, age 80, both hemispheres 30.2
2160 Male, age 61, both hemispheres 29.6
2459 Female, age 91, both hemispheres 29.2
2172 Female, age 85, both hemispheres 25.9
Nucleus raphe obscurus
nTPM: 35.4
2845 Female, age 85, midline 38.7
2142 Male, age 76, midline 35.4
2800 Male, age 61, midline 32.3
Nucleus raphe pallidus
nTPM: 31.0
2145 Male, age 76, midline 37.8
2183 Male, age 80, midline 29.7
1924 Male, age 61, midline 25.6
Nucleus tractus solitarii
nTPM: 38.6
2144 Female, age 91, right hemisphere 41.8
2191 Female, age 85, both hemispheres 40.2
2307 Male, age 80, both hemispheres 38.7
2656 Male, age 76, both hemispheres 33.8
Paramedian reticular nucleus
nTPM: 28.0
2057 Male, age 80, both hemispheres 29.2
2313 Male, age 61, both hemispheres 29.1
2052 Male, age 76, both hemispheres 27.3
2050 Female, age 85, both hemispheres 26.5
Parvicellular reticular nuclei
nTPM: 29.6
2119 Male, age 80, both hemispheres 30.7
2558 Male, age 74, both hemispheres 29.5
2095 Male, age 76, both hemispheres 28.6
Parvicellular reticular nuclei, medullary
nTPM: 34.8
2189 Female, age 91, both hemispheres 37.4
2181 Male, age 80, left hemisphere 35.3
2091 Female, age 85, both hemispheres 31.6
Pedunculopontine tegmental nucleus
nTPM: 35.3
1921 Female, age 85, both hemispheres 35.7
2334 Male, age 80, both hemispheres 35.6
2338 Male, age 61, both hemispheres 34.7
Peritrigeminal nucleus
nTPM: 30.8
2136 Male, age 76, both hemispheres 32.2
2067 Female, age 85, both hemispheres 30.3
2179 Male, age 61, both hemispheres 29.9
Pontine nuclei
nTPM: 27.1
1863 Male, age 55, unknown 30.7
2319 Female, age 91, both hemispheres 30.1
2787 Female, age 85, both hemispheres 27.3
2109 Female, age 72, unknown 26.9
1968 Male, age 76, left hemisphere 26.5
2454 Male, age 74, left hemisphere 26.4
2115 Male, age 80, left hemisphere 25.0
2727 Male, age 61, right hemisphere 24.3
Pontine raphe nucleus
nTPM: 25.2
2853 Male, age 76, midline 26.5
2122 Female, age 85, midline 23.9
Posteroventral cochlear nucleus
nTPM: 28.1
2752 Female, age 85, both hemispheres 30.8
2341 Male, age 80, both hemispheres 29.1
2371 Male, age 61, both hemispheres 28.1
2135 Female, age 91, both hemispheres 27.2
2070 Male, age 76, both hemispheres 25.1
Prepositus hypoglossal nucleus
nTPM: 31.7
2086 Male, age 80, both hemispheres 33.6
2855 Female, age 85, right hemisphere 29.7
Principal sensory trigeminal nucleus
nTPM: 29.5
2324 Male, age 76, both hemispheres 32.7
2367 Female, age 91, left hemisphere 30.6
2158 Male, age 61, both hemispheres 28.6
2008 Male, age 80, left hemisphere 26.2
Reticular pontine nucleus, caudal
nTPM: 32.0
2457 Female, age 91, both hemispheres 35.8
2332 Male, age 80, right hemisphere 31.7
2559 Male, age 74, both hemispheres 30.5
2092 Male, age 76, both hemispheres 30.0
Reticular pontine nucleus, oral
nTPM: 28.0
2366 Female, age 91, both hemispheres 35.1
2167 Male, age 76, both hemispheres 27.5
1939 Male, age 80, both hemispheres 27.4
2361 Male, age 74, both hemispheres 25.4
2012 Female, age 85, both hemispheres 24.8
Reticulotegmental nucleus
nTPM: 32.6
2452 Male, age 74, both hemispheres 36.0
2322 Female, age 91, both hemispheres 34.9
2325 Male, age 76, both hemispheres 30.1
2333 Male, age 80, both hemispheres 29.2
Spinal trigeminal nucleus, caudal
nTPM: 34.8
2642 Male, age 74, both hemispheres 42.6
2390 Female, age 91, both hemispheres 39.1
2308 Male, age 80, both hemispheres 34.7
2312 Male, age 61, both hemispheres 30.9
2447 Male, age 76, both hemispheres 26.8
Spinal trigeminal nucleus, interpolar
nTPM: 32.3
2389 Female, age 91, both hemispheres 37.7
2625 Male, age 61, both hemispheres 37.1
2386 Female, age 85, both hemispheres 31.0
2033 Male, age 80, both hemispheres 29.0
2066 Male, age 76, right hemisphere 26.8
Spinal trigeminal nucleus, oral
nTPM: 33.7
2164 Male, age 80, both hemispheres 37.4
1978 Male, age 76, both hemispheres 33.3
2737 Female, age 85, both hemispheres 30.3
Spinal vestibular nucleus
nTPM: 31.5
2186 Female, age 91, both hemispheres 38.6
2384 Male, age 74, both hemispheres 33.9
2806 Female, age 85, both hemispheres 31.1
2796 Male, age 61, both hemispheres 29.6
2780 Male, age 80, both hemispheres 29.5
2748 Male, age 76, both hemispheres 25.9
Subcoeruleus area
nTPM: 32.0
2451 Male, age 74, both hemispheres 37.1
2323 Female, age 91, left hemisphere 34.8
1958 Male, age 80, both hemispheres 32.2
2089 Male, age 76, left hemisphere 29.4
2369 Female, age 85, left hemisphere 26.3
Superior olive
nTPM: 29.7
2561 Female, age 91, both hemispheres 33.5
2329 Male, age 80, right hemisphere 30.7
2364 Male, age 74, right hemisphere 29.5
2020 Male, age 76, both hemispheres 28.2
1875 Female, age 85, both hemispheres 26.5
Superior vestibular nucleus
nTPM: 35.6
2383 Male, age 74, both hemispheres 42.3
2015 Male, age 80, both hemispheres 32.6
2061 Male, age 76, both hemispheres 31.8
Ventral medullary reticular nucleus
nTPM: 34.1
2372 Male, age 61, both hemispheres 34.6
2060 Male, age 76, both hemispheres 33.5
Ventral periolivary nuclei
nTPM: 28.4
2165 Male, age 80, both hemispheres 32.3
2794 Female, age 91, left hemisphere 29.7
2130 Female, age 85, both hemispheres 26.5
2023 Male, age 76, both hemispheres 25.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 33.8
2302 Female, age 91, both hemispheres 37.1
2180 Male, age 61, both hemispheres 34.4
2118 Male, age 80, both hemispheres 33.3
2741 Female, age 85, both hemispheres 32.3
1986 Male, age 76, both hemispheres 31.8
Ventrolateral tegmental area, A5 NE cell group
nTPM: 33.0
2840 Female, age 85, both hemispheres 40.5
2449 Male, age 74, both hemispheres 32.4
2359 Male, age 61, both hemispheres 32.1
2161 Male, age 80, both hemispheres 31.6
1959 Male, age 76, both hemispheres 31.2
2456 Female, age 91, both hemispheres 30.3

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 36.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 36.5
FF:10182-103D2 60 years, female 43.5
FF:10165-103B3 76 years, female 29.5
Medulla oblongata
Scaled Tags Per Million: 25.5
FF:10038-101F2 18-64 years, mixed 27.0
FF:10174-103C3 60 years, female 25.1
FF:10155-103A2 76 years, female 24.4
Pons
Scaled Tags Per Million: 21.4
FF:10033-101E6 18-54 years, mixed 21.4

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 14.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 14.0
Samples: 4

Max nTPM: 16.5
Min nTPM: 11.1
Sample A Female 16.5
Sample B Female 14.0
Sample C Male 14.4
Sample D Male 11.1
Pons
nTPM: 14.7
Samples: 4

Max nTPM: 20.1
Min nTPM: 12.0
Sample A Female 13.1
Sample B Female 20.1
Sample C Male 13.6
Sample D Male 12.0

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 13.1
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 13.1
Samples: 4

Max nTPM: 13.9
Min nTPM: 11.9
Sample A Male 12.8
Sample B Male 13.9
Sample C Female 11.9
Sample D Female 13.9

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.0
2546 Antisense, RP_040420_01_H08, Mouse strain C57BL/6J (56 days, male) 9.0
2545 Antisense, RP_040420_01_H08, Mouse strain C57BL/6J (56 days, male) 3.7
77454618 Antisense, RP_070129_01_A11, Mouse strain C57BL/6J (56 days, male) 3.1
79488931 Antisense, RP_070129_01_A11, Mouse strain C57BL/6J (56 days, male) 2.1
927 Antisense, RP_040420_01_H08, Mouse strain C57BL/6J (56 days, male) 0.0
929 Sense, RPS_Baylor_37037, Mouse strain C57BL/6J (56 days, male) 0.0
Pons
Expression energy: 4.0
2546 Antisense, RP_040420_01_H08, Mouse strain C57BL/6J (56 days, male) 8.8
2545 Antisense, RP_040420_01_H08, Mouse strain C57BL/6J (56 days, male) 4.4
77454618 Antisense, RP_070129_01_A11, Mouse strain C57BL/6J (56 days, male) 3.1
79488931 Antisense, RP_070129_01_A11, Mouse strain C57BL/6J (56 days, male) 1.7
927 Antisense, RP_040420_01_H08, Mouse strain C57BL/6J (56 days, male) 0.1
929 Sense, RPS_Baylor_37037, Mouse strain C57BL/6J (56 days, male) 0.0

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