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SYNDIG1L
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:439.1 nTPM
FANTOM5:145.6 Scaled Tags Per Million
Pig:124.0 nTPM

CAUDATE - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042594Antibody HPA048487
Glial cells Not detectedNot detected
Neuronal cells MediumLow




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

439.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 439.1
Samples: 246

Max nTPM: 1044.5
Min nTPM: 2.9
Std nTPM: 205.5
Median nTPM: 442.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1044.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 949.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 943.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 936.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 927.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 924.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 899.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 865.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 827.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 810.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 809.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 803.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 782.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 770.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 749.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 744.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 743.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 743.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 735.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 731.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 714.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 710.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 700.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 696.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 694.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 685.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 682.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 680.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 679.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 673.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 670.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 667.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 663.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 663.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 657.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 653.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 651.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 650.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 649.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 647.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 639.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 635.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 632.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 629.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 627.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 627.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 619.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 617.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 609.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 607.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 606.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 605.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 603.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 602.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 602.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 599.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 598.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 596.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 593.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 593.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 589.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 588.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 580.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 578.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 577.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 576.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 569.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 568.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 567.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 564.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 562.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 561.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 559.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 558.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 555.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 555.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 554.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 554.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 547.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 544.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 543.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 538.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 532.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 531.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 530.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 527.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 525.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 522.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 515.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 509.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 507.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 505.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 502.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 499.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 499.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 495.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 491.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 490.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 488.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 486.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 485.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 483.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 482.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 480.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 479.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 479.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 478.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 478.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 477.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 476.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 474.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 466.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 464.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 464.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 456.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 453.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 453.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 451.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 449.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 448.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 447.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 446.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 444.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 441.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 438.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 435.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 427.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 423.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 421.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 416.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 416.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 416.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 415.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 415.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 411.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 411.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 408.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 407.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 404.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 401.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 401.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 400.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 400.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 397.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 394.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 393.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 389.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 387.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 383.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 382.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 381.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 378.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 377.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 365.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 363.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 356.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 356.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 354.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 349.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 349.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 347.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 346.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 343.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 334.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 333.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 332.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 329.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 327.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 312.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 309.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 303.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 303.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 301.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 299.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 299.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 296.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 296.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 295.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 292.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 292.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 289.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 275.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 273.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 272.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 272.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 268.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 261.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 259.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 256.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 255.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 246.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 242.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 239.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 236.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 236.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 233.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 232.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 230.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 227.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 223.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 222.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 220.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 218.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 216.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 214.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 212.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 210.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 208.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 206.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 206.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 204.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 204.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 200.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 200.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 192.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 188.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 185.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 183.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 180.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 179.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 177.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 175.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 173.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 172.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 166.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 160.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 154.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 150.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 146.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 145.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 144.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 143.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 139.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 136.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 125.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 118.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 118.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 118.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 89.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 84.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 84.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 83.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 70.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 64.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 51.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 2.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

145.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 145.6
FF:10164-103B2 76 years, female 145.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.0
Pig sample Sample description nTPM
Caudate
nTPM: 124.0
Samples: 4

Max nTPM: 184.6
Min nTPM: 68.9
Sample A Female 68.9
Sample B Female 111.0
Sample C Male 184.6
Sample D Male 131.5

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