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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:130.1 nTPM
FANTOM5:185.5 Scaled Tags Per Million
Pig:161.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044133
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 130.1
Samples: 246

Max nTPM: 338.5
Min nTPM: 35.9
Std nTPM: 58.5
Median nTPM: 121.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 338.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 325.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 296.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 283.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 280.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 279.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 265.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 261.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 253.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 249.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 246.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 233.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 232.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 228.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 223.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 220.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 218.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 217.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 217.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 214.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 213.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 212.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 206.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 206.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 206.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 205.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 204.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 203.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 203.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 201.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 200.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 199.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 195.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 194.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 194.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 193.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 188.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 187.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 187.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 186.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 185.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 185.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 185.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 184.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 184.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 183.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 183.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 182.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 181.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 181.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 179.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 179.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 178.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 178.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 178.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 176.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 176.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 176.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 176.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 175.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 174.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 173.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 173.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 171.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 171.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 170.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 169.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 168.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 166.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 162.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 161.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 160.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 159.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 158.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 157.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 155.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 155.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 152.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 149.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 149.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 149.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 148.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 148.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 148.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 148.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 147.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 146.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 144.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 144.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 143.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 142.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 142.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 141.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 140.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 138.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 136.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 133.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 132.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 131.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 130.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 130.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 129.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 128.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 128.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 128.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 128.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 127.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 127.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 126.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 126.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 126.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 125.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 124.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 123.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 123.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 123.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 122.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 122.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 122.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 121.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 121.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 121.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 121.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 121.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 120.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 120.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 120.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 120.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 120.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 120.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 119.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 118.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 118.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 118.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 118.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 117.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 117.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 116.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 115.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 115.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 115.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 113.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 111.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 111.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 110.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 110.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 109.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 109.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 109.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 108.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 108.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 107.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 107.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 107.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 106.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 104.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 102.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 102.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 102.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 101.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 101.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 100.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 100.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 99.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 99.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 97.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 97.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 95.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 95.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 95.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 94.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 94.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 93.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 92.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 92.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 92.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 91.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 90.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 88.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 86.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 85.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 85.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 85.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 85.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 85.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 84.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 83.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 82.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 81.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 80.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 80.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 79.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 79.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 78.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 78.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 77.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 76.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 76.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 74.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 74.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 73.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 71.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 71.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 71.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 71.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 70.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 70.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 69.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 68.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 68.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 66.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 66.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 65.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 65.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 64.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 63.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 63.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 63.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 63.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 63.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 62.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 62.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 60.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 60.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 59.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 59.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 56.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 56.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 55.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 54.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 53.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 52.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 50.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 50.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 48.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 46.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 45.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 44.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 43.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 43.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 41.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 41.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 41.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 40.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 38.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 35.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

185.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 185.5
FF:10164-103B2 76 years, female 185.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.6
Pig sample Sample description nTPM
Caudate
nTPM: 161.6
Samples: 4

Max nTPM: 175.2
Min nTPM: 149.4
Sample A Female 149.4
Sample B Female 171.6
Sample C Male 175.2
Sample D Male 150.3

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