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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:149.2 nTPM
FANTOM5:47.0 Scaled Tags Per Million
Pig:169.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003906Antibody CAB015350Antibody CAB015424
Glial cells MediumLowNot detected
Neuronal cells MediumMediumLow







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 149.2
Samples: 246

Max nTPM: 260.6
Min nTPM: 91.8
Std nTPM: 28.3
Median nTPM: 146.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 260.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 251.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 243.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 231.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 229.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 221.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 219.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 217.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 217.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 217.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 213.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 210.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 207.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 200.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 196.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 194.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 191.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 191.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 188.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 188.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 186.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 184.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 184.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 184.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 182.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 182.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 181.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 181.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 181.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 179.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 179.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 179.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 178.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 178.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 177.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 177.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 176.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 176.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 175.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 174.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 174.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 174.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 172.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 172.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 172.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 169.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 169.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 168.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 168.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 167.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 167.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 167.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 166.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 166.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 166.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 165.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 165.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 165.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 165.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 165.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 164.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 164.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 163.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 162.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 161.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 161.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 160.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 160.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 159.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 159.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 159.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 159.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 159.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 157.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 157.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 156.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 156.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 155.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 155.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 155.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 155.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 155.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 154.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 154.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 154.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 154.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 154.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 154.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 153.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 153.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 153.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 153.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 152.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 152.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 152.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 152.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 151.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 151.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 151.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 151.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 151.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 151.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 150.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 150.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 150.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 149.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 149.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 149.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 149.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 149.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 149.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 149.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 148.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 148.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 148.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 148.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 148.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 148.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 148.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 148.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 147.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 146.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 146.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 146.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 146.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 146.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 145.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 145.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 145.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 145.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 144.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 144.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 144.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 144.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 144.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 144.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 144.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 143.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 142.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 141.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 140.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 140.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 140.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 140.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 139.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 139.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 139.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 138.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 138.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 138.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 138.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 138.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 138.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 137.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 137.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 137.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 137.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 137.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 136.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 135.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 135.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 135.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 135.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 135.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 135.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 134.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 134.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 133.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 133.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 133.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 133.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 132.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 131.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 131.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 131.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 131.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 131.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 131.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 131.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 130.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 130.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 130.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 130.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 130.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 130.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 130.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 130.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 130.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 129.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 129.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 129.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 129.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 128.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 128.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 128.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 127.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 126.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 126.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 125.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 125.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 124.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 124.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 124.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 123.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 123.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 123.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 123.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 123.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 122.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 122.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 121.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 121.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 121.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 121.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 120.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 120.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 119.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 119.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 118.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 118.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 118.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 118.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 117.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 117.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 116.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 116.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 115.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 115.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 115.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 114.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 114.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 114.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 113.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 113.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 112.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 109.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 106.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 106.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 106.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 103.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 101.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 100.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 99.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 93.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 92.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 91.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

47.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 47.0
FF:10164-103B2 76 years, female 47.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.9
Pig sample Sample description nTPM
Caudate
nTPM: 169.9
Samples: 4

Max nTPM: 194.9
Min nTPM: 143.9
Sample A Female 143.9
Sample B Female 176.2
Sample C Male 194.9
Sample D Male 164.5

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