PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Medulla oblongatai 		97.063
Mouse brain, Intensity
Ponsi 		145.462
RNA expressioni
HPA Brain:73.6 nTPM
FANTOM5:64.2 Scaled Tags Per Million
Pig:160.5 nTPM
Mouse:63.5 nTPM
Allen mouse:0.9 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei , antibody HPA003534
Medulla oblongata mean intensity 97.063
intensityi
FRONT BACK
Nucleus of the solitary tract 97.063
Raphe magnus nucleus 5.151
Cochlear nucleus 0.079
Lateral paragigantocellular nucleus 1.778
Raphe pallidus nucleus 1.301
Facial nucleus 3.844
Hypoglossal nucleus -
Ambiguus nucleus 0.218
External cuneate nucleus 2.032
Inferior olivary nucleus 1.405
Raphe obscures nucleus 0.973
Dorsal motor nucleus of vagus 32.169
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 1.968
Parabrachial nucleus 17.993
Principle sensory trigeminal nucleus 4.153
Locus coeruleus 44.609
Pontine nucleus 3.348
Vestibular nucleus 1.920
Pontine reticular nucleus, oral 2.133
Lateral lemniscus 145.462
Superior paraolivary nucleus 0.256

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 73.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 11.2
2090 Male, age 80, both hemispheres 14.4
2301 Female, age 85, both hemispheres 12.2
2188 Female, age 91, both hemispheres 11.7
1984 Male, age 76, both hemispheres 6.6
Area postrema
nTPM: 13.6
2054 Male, age 76, both hemispheres 28.6
2306 Male, age 80, both hemispheres 7.6
2799 Male, age 61, both hemispheres 4.6
Dorsal cochlear nucleus
nTPM: 20.7
2187 Female, age 91, both hemispheres 27.7
2058 Male, age 76, both hemispheres 27.0
2370 Male, age 61, both hemispheres 25.0
2802 Male, age 74, right hemisphere 13.3
2378 Male, age 80, both hemispheres 10.7
Dorsal medullary reticular nucleus
nTPM: 29.3
2040 Female, age 85, both hemispheres 43.8
2088 Male, age 76, both hemispheres 23.4
2373 Male, age 61, both hemispheres 20.7
Dorsal motor vagal complex
nTPM: 33.0
2844 Male, age 55, unknown 60.2
2813 Female, age 72, unknown 51.5
2133 Female, age 91, both hemispheres 48.1
2000 Male, age 74, unknown 32.5
2807 Female, age 85, both hemispheres 28.0
2643 Male, age 74, both hemispheres 19.6
2797 Male, age 61, both hemispheres 13.8
2185 Male, age 76, both hemispheres 10.3
Dorsal tegmental nucleus
nTPM: 23.3
2083 Male, age 80, both hemispheres 24.1
2358 Male, age 61, both hemispheres 23.6
1936 Male, age 76, left hemisphere 23.5
2326 Male, age 74, both hemispheres 21.9
Dorsolateral tegmental area
nTPM: 27.8
2141 Male, age 76, both hemispheres 39.9
2360 Male, age 74, both hemispheres 31.4
2654 Male, age 80, both hemispheres 25.7
2751 Female, age 85, both hemispheres 24.4
2337 Male, age 61, both hemispheres 17.3
Gigantocellular reticular nuclei, medullary
nTPM: 19.5
2022 Male, age 76, right hemisphere 36.7
1876 Female, age 85, both hemispheres 34.2
2462 Male, age 74, both hemispheres 14.5
2310 Male, age 80, both hemispheres 13.2
2387 Female, age 91, both hemispheres 9.7
2314 Male, age 61, both hemispheres 8.4
Gigantocellular reticular nuclei, pars
nTPM: 14.3
2084 Female, age 85, both hemispheres 34.2
2336 Male, age 61, both hemispheres 21.9
2706 Male, age 80, both hemispheres 6.5
2330 Male, age 80, both hemispheres 5.3
2168 Male, age 76, both hemispheres 3.3
Inferior olive
nTPM: 8.9
2563 Male, age 74, both hemispheres 15.9
2379 Male, age 80, both hemispheres 8.7
2178 Male, age 61, both hemispheres 8.3
2085 Female, age 85, both hemispheres 6.6
2628 Female, age 91, both hemispheres 4.9
Kolliker-Fuse nucleus
nTPM: 16.9
2163 Male, age 80, both hemispheres 37.3
2315 Male, age 76, right hemisphere 6.8
2793 Female, age 91, left hemisphere 6.7
Lateral lemniscal nuclei
nTPM: 6.0
2453 Male, age 74, right hemisphere 11.2
2320 Female, age 91, left hemisphere 6.1
2746 Female, age 85, left hemisphere 5.4
2036 Male, age 80, both hemispheres 4.7
2169 Male, age 76, both hemispheres 2.5
Lateral medullary reticular nucleus
nTPM: 16.0
2190 Female, age 85, both hemispheres 22.1
2305 Male, age 74, both hemispheres 21.6
2852 Male, age 80, both hemispheres 17.3
2044 Male, age 76, both hemispheres 13.9
2374 Male, age 61, both hemispheres 12.5
2804 Female, age 91, both hemispheres 8.5
Lateral parabrachial nucleus
nTPM: 13.0
2790 Male, age 61, both hemispheres 22.6
2013 Male, age 80, both hemispheres 12.8
2792 Male, age 76, both hemispheres 9.4
2139 Female, age 85, right hemisphere 7.3
Lateral vestibular nucleus
nTPM: 26.5
2184 Male, age 76, both hemispheres 30.8
2311 Male, age 80, both hemispheres 22.1
Locus coeruleus
nTPM: 73.6
2014 Male, age 55, unknown 98.6
2720 Male, age 74, both hemispheres 80.7
2788 Male, age 74, unknown 80.6
2123 Female, age 91, both hemispheres 79.8
1980 Male, age 76, both hemispheres 70.0
2317 Female, age 72, unknown 54.1
2162 Male, age 80, both hemispheres 51.8
Medial olivary nucleus
nTPM: 10.3
2851 Male, age 80, both hemispheres 13.7
1943 Male, age 61, both hemispheres 12.0
1962 Male, age 76, both hemispheres 8.1
2138 Female, age 91, both hemispheres 7.5
Medial parabrachial nucleus
nTPM: 25.3
2170 Female, age 91, both hemispheres 37.2
2786 Male, age 76, both hemispheres 30.7
2156 Male, age 61, both hemispheres 27.3
2854 Male, age 80, both hemispheres 16.5
2463 Female, age 85, right hemisphere 14.7
Medial periolivary nuclei
nTPM: 8.6
2791 Male, age 74, right hemisphere 22.2
2458 Female, age 91, both hemispheres 7.0
2081 Male, age 80, both hemispheres 6.5
2171 Female, age 85, both hemispheres 4.3
2063 Male, age 76, both hemispheres 2.8
Medial vestibular nucleus
nTPM: 23.7
2134 Male, age 76, both hemispheres 34.1
2801 Male, age 74, both hemispheres 26.1
2743 Female, age 85, both hemispheres 24.8
2803 Female, age 91, both hemispheres 21.5
2093 Male, age 80, both hemispheres 19.5
2624 Male, age 61, both hemispheres 16.5
Motor facial nucleus
nTPM: 10.0
2126 Male, age 61, both hemispheres 22.4
2365 Male, age 74, right hemisphere 18.2
2697 Female, age 85, both hemispheres 5.8
2795 Female, age 91, both hemispheres 5.4
2327 Male, age 80, both hemispheres 4.4
2062 Male, age 76, both hemispheres 3.8
Motor hypoglossal nucleus
nTPM: 39.9
2461 Male, age 61, both hemispheres 57.0
2277 Male, age 76, both hemispheres 44.4
2132 Female, age 85, both hemispheres 42.2
2182 Male, age 80, both hemispheres 34.1
2125 Female, age 91, both hemispheres 22.0
Motor trigeminal nucleus
nTPM: 16.5
2335 Male, age 61, both hemispheres 26.9
2309 Male, age 76, both hemispheres 24.1
2321 Female, age 91, both hemispheres 13.5
2560 Male, age 74, both hemispheres 13.2
2079 Male, age 80, both hemispheres 5.0
Nuclei of the trapezoid body
nTPM: 4.2
2159 Male, age 61, both hemispheres 5.5
2368 Female, age 91, both hemispheres 5.3
2166 Male, age 80, both hemispheres 5.0
2735 Female, age 85, both hemispheres 3.3
1983 Male, age 76, both hemispheres 2.1
Nucleus ambiguus
nTPM: 25.0
2096 Female, age 85, both hemispheres 41.8
2071 Male, age 76, both hemispheres 8.3
Nucleus cuneatus
nTPM: 13.9
2562 Male, age 61, both hemispheres 26.9
2131 Male, age 76, both hemispheres 17.4
2381 Male, age 80, both hemispheres 17.4
2564 Male, age 74, both hemispheres 15.0
2808 Female, age 85, both hemispheres 12.6
2376 Male, age 61, both hemispheres 11.2
2805 Female, age 91, both hemispheres 9.9
2380 Male, age 80, both hemispheres 8.3
2100 Male, age 76, both hemispheres 6.2
Nucleus gracilis
nTPM: 13.1
2627 Male, age 74, both hemispheres 17.3
2382 Male, age 80, both hemispheres 13.0
2299 Female, age 85, both hemispheres 9.1
Nucleus raphe magnus
nTPM: 6.6
2455 Male, age 74, both hemispheres 15.5
2459 Female, age 91, both hemispheres 6.3
2160 Male, age 61, both hemispheres 5.1
2172 Female, age 85, both hemispheres 5.1
2328 Male, age 80, both hemispheres 4.6
2051 Male, age 76, both hemispheres 3.3
Nucleus raphe obscurus
nTPM: 9.9
2800 Male, age 61, midline 12.3
2142 Male, age 76, midline 9.1
2845 Female, age 85, midline 8.4
Nucleus raphe pallidus
nTPM: 22.2
2183 Male, age 80, midline 46.9
1924 Male, age 61, midline 10.4
2145 Male, age 76, midline 9.3
Nucleus tractus solitarii
nTPM: 36.7
2656 Male, age 76, both hemispheres 61.1
2307 Male, age 80, both hemispheres 32.6
2191 Female, age 85, both hemispheres 29.2
2144 Female, age 91, right hemisphere 23.8
Paramedian reticular nucleus
nTPM: 33.5
2313 Male, age 61, both hemispheres 55.0
2057 Male, age 80, both hemispheres 32.1
2052 Male, age 76, both hemispheres 25.1
2050 Female, age 85, both hemispheres 21.8
Parvicellular reticular nuclei
nTPM: 17.0
2119 Male, age 80, both hemispheres 23.8
2558 Male, age 74, both hemispheres 15.0
2095 Male, age 76, both hemispheres 12.1
Parvicellular reticular nuclei, medullary
nTPM: 41.1
2091 Female, age 85, both hemispheres 41.9
2189 Female, age 91, both hemispheres 41.3
2181 Male, age 80, left hemisphere 40.2
Pedunculopontine tegmental nucleus
nTPM: 35.7
1921 Female, age 85, both hemispheres 42.2
2334 Male, age 80, both hemispheres 40.8
2338 Male, age 61, both hemispheres 24.3
Peritrigeminal nucleus
nTPM: 16.1
2067 Female, age 85, both hemispheres 23.1
2179 Male, age 61, both hemispheres 17.6
2136 Male, age 76, both hemispheres 7.5
Pontine nuclei
nTPM: 6.3
2454 Male, age 74, left hemisphere 15.9
2319 Female, age 91, both hemispheres 7.9
2115 Male, age 80, left hemisphere 6.9
2109 Female, age 72, unknown 6.1
2727 Male, age 61, right hemisphere 5.1
2787 Female, age 85, both hemispheres 3.4
1968 Male, age 76, left hemisphere 3.2
1863 Male, age 55, unknown 2.1
Pontine raphe nucleus
nTPM: 40.8
2853 Male, age 76, midline 60.4
2122 Female, age 85, midline 21.3
Posteroventral cochlear nucleus
nTPM: 20.5
2752 Female, age 85, both hemispheres 41.5
2070 Male, age 76, both hemispheres 25.0
2371 Male, age 61, both hemispheres 16.2
2135 Female, age 91, both hemispheres 10.0
2341 Male, age 80, both hemispheres 9.7
Prepositus hypoglossal nucleus
nTPM: 19.5
2855 Female, age 85, right hemisphere 24.3
2086 Male, age 80, both hemispheres 14.7
Principal sensory trigeminal nucleus
nTPM: 10.6
2324 Male, age 76, both hemispheres 26.1
2367 Female, age 91, left hemisphere 7.1
2158 Male, age 61, both hemispheres 5.3
2008 Male, age 80, left hemisphere 3.9
Reticular pontine nucleus, caudal
nTPM: 9.5
2559 Male, age 74, both hemispheres 24.0
2457 Female, age 91, both hemispheres 5.9
2332 Male, age 80, right hemisphere 4.4
2092 Male, age 76, both hemispheres 3.7
Reticular pontine nucleus, oral
nTPM: 20.4
2167 Male, age 76, both hemispheres 29.9
2361 Male, age 74, both hemispheres 29.4
1939 Male, age 80, both hemispheres 24.1
2012 Female, age 85, both hemispheres 12.7
2366 Female, age 91, both hemispheres 5.8
Reticulotegmental nucleus
nTPM: 19.6
2325 Male, age 76, both hemispheres 23.2
2322 Female, age 91, both hemispheres 19.6
2452 Male, age 74, both hemispheres 18.5
2333 Male, age 80, both hemispheres 17.1
Spinal trigeminal nucleus, caudal
nTPM: 26.4
2390 Female, age 91, both hemispheres 42.6
2642 Male, age 74, both hemispheres 26.3
2308 Male, age 80, both hemispheres 22.6
2312 Male, age 61, both hemispheres 22.3
2447 Male, age 76, both hemispheres 18.1
Spinal trigeminal nucleus, interpolar
nTPM: 32.4
2625 Male, age 61, both hemispheres 58.7
2386 Female, age 85, both hemispheres 40.8
2033 Male, age 80, both hemispheres 37.4
2066 Male, age 76, right hemisphere 13.6
2389 Female, age 91, both hemispheres 11.6
Spinal trigeminal nucleus, oral
nTPM: 32.9
1978 Male, age 76, both hemispheres 38.1
2737 Female, age 85, both hemispheres 33.6
2164 Male, age 80, both hemispheres 27.1
Spinal vestibular nucleus
nTPM: 26.3
2780 Male, age 80, both hemispheres 33.8
2186 Female, age 91, both hemispheres 26.7
2806 Female, age 85, both hemispheres 26.2
2748 Male, age 76, both hemispheres 25.7
2796 Male, age 61, both hemispheres 25.4
2384 Male, age 74, both hemispheres 19.9
Subcoeruleus area
nTPM: 25.9
2323 Female, age 91, left hemisphere 48.0
2451 Male, age 74, both hemispheres 28.7
1958 Male, age 80, both hemispheres 22.8
2369 Female, age 85, left hemisphere 22.6
2089 Male, age 76, left hemisphere 7.3
Superior olive
nTPM: 7.7
2364 Male, age 74, right hemisphere 19.5
2561 Female, age 91, both hemispheres 5.9
2329 Male, age 80, right hemisphere 5.0
1875 Female, age 85, both hemispheres 4.9
2020 Male, age 76, both hemispheres 3.4
Superior vestibular nucleus
nTPM: 26.1
2383 Male, age 74, both hemispheres 28.1
2015 Male, age 80, both hemispheres 27.7
2061 Male, age 76, both hemispheres 22.4
Ventral medullary reticular nucleus
nTPM: 20.1
2060 Male, age 76, both hemispheres 30.9
2372 Male, age 61, both hemispheres 9.3
Ventral periolivary nuclei
nTPM: 4.6
2794 Female, age 91, left hemisphere 6.1
2165 Male, age 80, both hemispheres 4.8
2130 Female, age 85, both hemispheres 4.3
2023 Male, age 76, both hemispheres 3.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 16.9
2741 Female, age 85, both hemispheres 30.8
2180 Male, age 61, both hemispheres 23.3
1986 Male, age 76, both hemispheres 12.0
2118 Male, age 80, both hemispheres 10.5
2302 Female, age 91, both hemispheres 7.8
Ventrolateral tegmental area, A5 NE cell group
nTPM: 13.5
2359 Male, age 61, both hemispheres 29.2
2840 Female, age 85, both hemispheres 21.5
2449 Male, age 74, both hemispheres 15.4
2161 Male, age 80, both hemispheres 6.9
2456 Female, age 91, both hemispheres 5.3
1959 Male, age 76, both hemispheres 2.5

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 64.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 64.2
FF:10182-103D2 60 years, female 64.2
FF:10165-103B3 76 years, female 64.2
Medulla oblongata
Scaled Tags Per Million: 40.0
FF:10038-101F2 18-64 years, mixed 55.5
FF:10174-103C3 60 years, female 32.3
FF:10155-103A2 76 years, female 32.3
Pons
Scaled Tags Per Million: 28.1
FF:10033-101E6 18-54 years, mixed 28.1

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 160.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 112.4
Samples: 4

Max nTPM: 133.6
Min nTPM: 97.1
Sample A Female 114.5
Sample B Female 104.3
Sample C Male 133.6
Sample D Male 97.1
Pons
nTPM: 160.6
Samples: 4

Max nTPM: 223.9
Min nTPM: 112.2
Sample A Female 132.5
Sample B Female 173.6
Sample C Male 223.9
Sample D Male 112.2

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 63.5
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 63.6
Samples: 4

Max nTPM: 69.7
Min nTPM: 58.2
Sample A Male 67.2
Sample B Male 69.7
Sample C Female 59.2
Sample D Female 58.2

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.4
67936006 Antisense, RP_040604_01_F06, Mouse strain C57BL/6J (56 days, male) 0.8
76098396 Antisense, RP_060626_01_G09, Mouse strain C57BL/6J (56 days, male) 0.4
77414160 Antisense, RP_070205_01_F05, Mouse strain C57BL/6J (56 days, male) 0.0
Pons
Expression energy: 0.9
67936006 Antisense, RP_040604_01_F06, Mouse strain C57BL/6J (56 days, male) 2.3
76098396 Antisense, RP_060626_01_G09, Mouse strain C57BL/6J (56 days, male) 0.4
77414160 Antisense, RP_070205_01_F05, Mouse strain C57BL/6J (56 days, male) 0.0

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