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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:72.2 nTPM
FANTOM5:85.4 Scaled Tags Per Million
Pig:193.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031192Antibody CAB009752
Glial cells Not detectedLow
Neuronal cells LowMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 72.2
Samples: 246

Max nTPM: 174.4
Min nTPM: 7.1
Std nTPM: 38.6
Median nTPM: 69.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 174.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 173.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 173.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 172.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 161.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 157.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 150.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 149.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 147.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 143.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 142.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 141.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 139.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 136.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 136.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 135.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 131.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 130.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 127.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 125.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 124.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 124.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 124.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 123.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 123.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 121.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 121.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 120.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 120.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 120.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 119.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 117.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 116.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 115.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 114.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 114.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 114.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 114.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 112.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 112.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 112.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 111.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 111.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 110.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 110.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 109.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 109.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 108.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 108.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 107.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 107.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 107.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 106.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 104.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 104.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 104.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 104.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 104.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 103.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 102.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 101.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 101.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 101.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 100.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 100.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 100.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 99.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 98.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 98.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 98.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 96.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 96.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 96.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 95.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 95.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 94.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 94.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 93.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 92.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 92.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 91.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 91.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 89.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 89.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 89.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 88.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 88.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 87.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 87.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 86.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 86.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 85.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 84.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 84.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 84.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 83.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 82.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 82.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 80.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 79.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 79.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 78.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 77.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 77.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 77.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 76.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 76.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 76.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 76.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 75.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 75.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 74.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 73.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 73.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 73.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 72.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 71.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 71.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 71.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 70.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 69.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 69.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 69.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 69.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 69.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 69.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 69.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 67.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 67.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 66.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 65.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 65.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 65.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 64.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 64.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 64.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 64.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 63.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 62.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 62.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 62.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 61.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 61.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 60.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 60.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 60.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 59.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 59.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 58.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 57.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 56.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 56.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 56.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 55.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 55.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 55.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 54.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 54.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 52.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 52.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 51.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 51.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 50.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 48.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 48.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 48.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 47.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 46.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 45.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 45.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 45.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 44.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 44.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 43.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 43.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 42.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 42.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 42.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 41.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 40.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 40.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 39.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 39.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 38.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 37.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 36.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 36.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 35.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 34.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 34.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 33.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 33.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 33.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 32.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 32.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 32.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 31.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 31.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 31.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 30.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 30.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 30.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 30.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 29.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 29.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 29.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 28.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 28.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 27.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 27.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 27.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 27.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 26.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 26.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 26.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 26.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 26.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 26.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 25.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 25.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 25.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 25.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 24.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 24.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 24.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 23.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 22.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 22.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 21.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 21.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 19.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 19.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 18.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 18.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 17.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 16.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 16.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 16.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 16.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 15.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 15.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 14.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 14.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 13.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 9.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 7.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

85.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 85.4
FF:10164-103B2 76 years, female 85.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

193.0
Pig sample Sample description nTPM
Caudate
nTPM: 193.0
Samples: 4

Max nTPM: 245.2
Min nTPM: 141.9
Sample A Female 141.9
Sample B Female 190.2
Sample C Male 245.2
Sample D Male 194.8

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