We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
EVL
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • EVL
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:154.7 nTPM
FANTOM5:265.1 Scaled Tags Per Million
Pig:161.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA018849Antibody HPA019536Antibody CAB033987
Glial cells Not detectedMediumLow
Neuronal cells Not detectedNot detectedLow







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 154.7
Samples: 246

Max nTPM: 280.2
Min nTPM: 46.9
Std nTPM: 43.0
Median nTPM: 156.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 280.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 273.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 269.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 260.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 241.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 240.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 238.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 233.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 232.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 231.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 231.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 225.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 224.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 222.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 222.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 221.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 219.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 219.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 215.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 215.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 214.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 210.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 209.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 208.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 208.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 208.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 207.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 205.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 203.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 203.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 203.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 202.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 202.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 202.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 200.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 200.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 200.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 199.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 198.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 197.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 197.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 197.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 196.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 195.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 193.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 193.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 192.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 191.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 189.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 188.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 187.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 187.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 187.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 186.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 186.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 185.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 185.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 185.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 184.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 183.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 183.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 183.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 183.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 183.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 182.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 181.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 180.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 180.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 178.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 178.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 178.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 177.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 176.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 176.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 176.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 176.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 175.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 174.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 174.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 173.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 173.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 173.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 173.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 172.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 172.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 171.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 171.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 171.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 170.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 170.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 169.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 169.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 168.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 168.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 167.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 167.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 166.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 166.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 166.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 165.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 165.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 164.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 164.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 164.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 164.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 163.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 162.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 161.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 161.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 161.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 161.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 160.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 160.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 160.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 159.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 159.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 158.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 158.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 157.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 157.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 157.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 157.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 156.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 156.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 155.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 155.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 155.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 154.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 153.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 153.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 153.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 153.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 153.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 150.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 150.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 150.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 148.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 148.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 148.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 148.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 147.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 147.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 146.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 145.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 143.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 141.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 141.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 141.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 140.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 140.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 140.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 140.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 139.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 139.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 139.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 139.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 138.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 137.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 137.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 137.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 136.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 135.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 134.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 134.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 134.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 134.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 133.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 133.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 133.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 132.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 132.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 131.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 131.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 130.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 130.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 130.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 129.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 129.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 129.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 128.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 128.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 128.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 127.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 126.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 125.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 125.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 125.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 124.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 123.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 122.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 120.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 120.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 119.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 119.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 119.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 118.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 118.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 117.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 116.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 113.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 113.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 111.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 111.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 110.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 110.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 110.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 109.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 109.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 109.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 109.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 107.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 107.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 106.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 106.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 105.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 105.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 105.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 104.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 104.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 103.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 102.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 99.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 98.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 96.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 96.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 96.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 95.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 92.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 91.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 91.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 88.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 86.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 85.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 83.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 82.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 82.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 80.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 79.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 76.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 70.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 65.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 64.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 61.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 60.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 51.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 46.9
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

265.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 265.1
FF:10164-103B2 76 years, female 265.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.0
Pig sample Sample description nTPM
Caudate
nTPM: 161.0
Samples: 4

Max nTPM: 207.0
Min nTPM: 123.3
Sample A Female 123.3
Sample B Female 163.0
Sample C Male 207.0
Sample D Male 150.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org