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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:210.1 nTPM
FANTOM5:384.2 Scaled Tags Per Million
Pig:219.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA012947
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

210.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 210.1
Samples: 246

Max nTPM: 398.8
Min nTPM: 65.2
Std nTPM: 64.7
Median nTPM: 209.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 398.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 377.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 359.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 354.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 351.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 347.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 344.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 342.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 335.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 329.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 324.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 323.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 320.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 318.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 310.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 309.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 306.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 296.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 296.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 295.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 294.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 293.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 289.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 288.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 287.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 286.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 285.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 285.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 283.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 281.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 279.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 278.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 277.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 277.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 277.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 276.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 276.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 275.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 274.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 274.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 274.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 274.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 273.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 272.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 272.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 271.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 270.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 270.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 269.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 267.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 267.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 266.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 265.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 265.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 265.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 265.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 264.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 260.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 260.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 259.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 257.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 256.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 255.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 253.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 252.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 252.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 251.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 251.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 251.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 250.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 249.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 249.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 249.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 247.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 247.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 245.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 244.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 243.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 242.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 241.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 240.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 239.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 238.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 238.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 237.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 236.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 235.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 235.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 235.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 234.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 234.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 233.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 232.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 231.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 231.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 231.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 230.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 229.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 228.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 228.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 227.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 226.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 225.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 225.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 225.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 222.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 221.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 219.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 219.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 219.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 218.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 218.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 218.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 217.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 216.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 216.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 215.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 212.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 212.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 212.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 211.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 210.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 210.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 209.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 208.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 208.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 206.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 205.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 205.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 204.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 203.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 203.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 203.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 203.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 202.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 202.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 201.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 200.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 200.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 200.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 200.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 199.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 197.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 197.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 195.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 193.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 193.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 191.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 191.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 189.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 189.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 188.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 187.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 187.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 187.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 185.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 185.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 183.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 183.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 183.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 182.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 182.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 181.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 178.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 178.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 178.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 178.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 177.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 176.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 175.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 175.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 174.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 171.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 170.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 170.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 170.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 170.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 170.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 169.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 168.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 167.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 167.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 165.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 165.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 163.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 161.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 158.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 157.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 157.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 156.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 156.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 156.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 155.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 154.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 154.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 153.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 151.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 151.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 151.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 148.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 147.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 146.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 144.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 140.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 139.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 138.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 138.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 137.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 135.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 134.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 133.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 132.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 132.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 131.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 131.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 130.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 129.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 128.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 125.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 124.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 122.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 122.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 122.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 119.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 118.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 117.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 117.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 115.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 115.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 114.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 113.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 112.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 112.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 111.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 110.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 107.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 106.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 106.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 96.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 94.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 85.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 85.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 78.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 71.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 67.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 65.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

384.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 384.2
FF:10164-103B2 76 years, female 384.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

219.7
Pig sample Sample description nTPM
Caudate
nTPM: 219.7
Samples: 4

Max nTPM: 256.7
Min nTPM: 189.0
Sample A Female 189.0
Sample B Female 243.6
Sample C Male 256.7
Sample D Male 189.5

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