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COLGALT2
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:9.9 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:2.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031749Antibody HPA031750
Glial cells MediumHigh
Neuronal cells MediumHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.9
Samples: 246

Max nTPM: 25.8
Min nTPM: 2.9
Std nTPM: 3.9
Median nTPM: 9.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 25.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 24.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 23.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 20.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 20.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 18.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 18.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 18.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 18.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 18.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 18.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 18.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 18.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 17.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 17.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 16.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 16.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 16.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 16.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 16.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 16.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 16.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 15.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 15.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 15.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 15.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 15.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 14.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 14.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 14.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 14.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 14.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 14.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 14.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 14.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 14.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 13.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 13.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 13.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 13.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 13.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 13.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 13.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 13.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 13.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 13.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 12.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 12.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 12.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 12.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 12.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 12.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 12.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 12.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 12.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 12.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 12.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 12.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 12.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 12.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 12.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 12.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 12.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 11.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 11.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 11.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 11.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 11.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 11.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 11.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 11.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 11.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 11.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 11.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 11.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 11.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 11.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 11.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 11.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 11.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 11.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 11.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 11.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 11.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 11.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 11.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 11.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 11.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 11.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 11.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 10.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 10.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 10.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 10.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 10.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 10.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 10.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 10.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 10.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 10.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 10.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 10.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 10.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 10.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 10.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 10.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 10.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 10.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 9.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 9.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 9.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 9.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 9.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 9.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 9.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 9.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 9.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 9.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 9.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 9.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 9.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 9.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 9.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 9.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 9.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 9.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 9.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 8.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 8.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 8.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 8.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 8.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 8.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 8.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 8.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 8.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 8.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 8.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 8.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 8.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 8.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 8.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 8.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 8.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 8.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 8.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 8.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 8.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 8.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 8.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 8.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 8.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 8.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 8.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 8.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 8.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 8.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 8.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 8.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 7.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 7.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 7.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 7.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 7.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 7.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 7.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 7.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 7.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 7.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 7.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 7.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 7.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 7.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 7.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 7.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 7.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 7.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 7.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 7.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 7.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 7.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 7.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 7.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 7.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 7.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 7.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 7.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 6.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 6.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 6.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 6.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 6.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 6.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 6.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 6.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 6.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 6.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 6.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 6.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 6.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 6.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 6.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 6.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 6.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 6.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 6.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 6.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 6.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 6.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 6.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 6.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 5.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 5.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 5.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 5.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 5.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 5.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 5.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 5.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 5.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 5.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 5.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 5.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 5.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 5.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 5.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 5.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 5.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 5.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 5.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 5.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 4.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 4.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 4.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 4.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 4.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 4.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 4.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 4.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 3.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 3.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 3.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 3.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 3.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 3.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.2
FF:10164-103B2 76 years, female 28.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2.7
Pig sample Sample description nTPM
Caudate
nTPM: 2.7
Samples: 4

Max nTPM: 3.0
Min nTPM: 2.4
Sample A Female 2.4
Sample B Female 2.6
Sample C Male 2.9
Sample D Male 3.0

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