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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:168.1 nTPM
FANTOM5:72.9 Scaled Tags Per Million
Pig:15.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA019601Antibody CAB008667
Glial cells LowNot detected
Neuronal cells MediumLow




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 168.1
Samples: 246

Max nTPM: 513.1
Min nTPM: 69.7
Std nTPM: 57.0
Median nTPM: 159.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 513.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 371.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 371.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 361.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 311.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 304.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 301.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 296.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 288.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 285.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 276.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 272.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 271.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 269.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 264.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 263.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 261.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 258.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 255.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 254.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 254.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 248.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 247.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 244.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 234.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 232.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 232.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 227.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 227.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 226.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 223.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 219.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 218.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 218.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 217.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 216.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 216.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 215.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 212.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 211.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 210.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 209.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 207.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 206.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 206.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 205.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 205.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 202.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 202.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 201.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 200.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 200.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 200.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 199.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 199.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 198.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 196.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 196.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 195.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 195.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 194.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 194.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 192.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 192.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 191.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 191.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 191.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 190.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 190.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 190.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 188.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 187.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 187.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 185.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 184.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 184.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 184.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 183.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 183.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 183.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 182.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 182.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 181.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 181.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 180.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 179.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 178.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 177.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 176.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 176.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 175.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 175.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 175.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 174.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 174.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 173.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 173.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 172.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 171.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 171.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 169.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 169.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 168.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 167.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 166.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 166.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 166.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 165.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 165.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 164.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 164.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 164.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 163.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 162.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 162.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 161.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 161.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 161.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 161.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 160.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 159.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 159.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 159.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 158.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 158.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 158.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 158.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 158.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 157.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 157.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 156.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 155.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 154.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 153.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 153.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 153.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 152.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 150.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 150.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 149.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 149.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 149.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 149.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 148.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 148.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 147.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 147.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 147.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 147.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 146.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 146.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 145.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 145.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 144.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 143.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 143.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 143.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 142.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 141.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 140.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 140.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 140.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 138.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 138.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 136.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 136.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 136.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 135.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 135.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 135.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 135.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 134.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 134.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 133.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 132.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 132.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 130.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 130.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 129.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 129.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 129.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 129.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 128.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 128.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 128.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 128.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 128.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 128.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 127.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 127.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 127.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 126.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 126.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 125.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 125.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 125.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 124.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 124.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 123.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 121.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 121.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 120.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 120.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 120.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 119.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 118.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 117.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 117.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 116.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 115.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 115.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 114.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 113.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 113.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 113.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 112.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 112.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 111.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 111.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 110.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 110.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 110.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 109.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 109.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 109.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 109.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 109.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 108.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 107.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 103.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 103.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 102.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 102.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 101.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 100.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 99.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 97.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 96.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 89.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 86.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 83.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 82.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 79.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 79.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 73.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 69.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

72.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 72.9
FF:10164-103B2 76 years, female 72.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.2
Pig sample Sample description nTPM
Caudate
nTPM: 15.2
Samples: 4

Max nTPM: 21.3
Min nTPM: 10.4
Sample A Female 10.4
Sample B Female 16.3
Sample C Male 21.3
Sample D Male 12.8

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