We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GPRASP1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • GPRASP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:25.7 nTPM
FANTOM5:59.8 Scaled Tags Per Million
Pig:35.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA000161
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.7
Samples: 246

Max nTPM: 65.1
Min nTPM: 7.3
Std nTPM: 10.6
Median nTPM: 23.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 65.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 61.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 56.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 54.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 52.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 48.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 48.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 47.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 47.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 47.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 46.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 45.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 43.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 42.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 42.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 42.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 41.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 41.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 40.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 40.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 40.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 40.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 40.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 39.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 39.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 39.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 39.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 38.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 38.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 38.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 38.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 38.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 37.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 37.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 37.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 37.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 37.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 37.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 36.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 36.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 36.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 36.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 36.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 36.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 36.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 36.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 36.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 35.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 35.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 35.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 35.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 35.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 35.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 34.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 34.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 34.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 34.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 34.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 34.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 33.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 33.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 33.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 33.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 33.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 33.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 32.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 32.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 32.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 32.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 32.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 32.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 31.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 31.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 31.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 30.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 30.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 30.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 30.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 30.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 30.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 29.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 29.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 29.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 28.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 28.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 28.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 28.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 28.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 28.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 28.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 28.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 28.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 27.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 27.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 27.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 27.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 27.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 27.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 27.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 27.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 27.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 27.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 27.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 26.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 26.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 26.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 26.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 26.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 26.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 26.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 25.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 25.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 25.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 25.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 25.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 25.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 25.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 24.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 24.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 24.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 24.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 24.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 24.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 23.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 23.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 23.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 23.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 23.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 23.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 23.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 22.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 22.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 22.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 22.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 22.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 22.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 22.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 22.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 22.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 22.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 22.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 22.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 21.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 21.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 21.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 21.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 21.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 21.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 21.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 21.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 21.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 20.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 20.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 20.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 20.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 20.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 19.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 19.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 19.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 19.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 19.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 19.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 19.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 19.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 19.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 18.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 18.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 18.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 18.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 18.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 18.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 18.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 18.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 18.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 18.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 18.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 18.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 17.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 17.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 17.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 17.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 17.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 17.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 17.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 17.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 17.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 17.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 17.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 17.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 16.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 16.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 16.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 16.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 16.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 15.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 15.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 15.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 15.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 15.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 15.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 15.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 15.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 15.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 15.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 15.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 15.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 15.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 15.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 15.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 14.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 14.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 14.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 14.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 14.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 14.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 14.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 14.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 14.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 14.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 14.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 13.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 13.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 13.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 13.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 13.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 13.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 12.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 12.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 12.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 12.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 12.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 12.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 12.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 12.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 11.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 11.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 11.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 11.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 10.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 10.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 9.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 9.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 9.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 9.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 7.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 7.3
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

59.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.8
FF:10164-103B2 76 years, female 59.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35.6
Pig sample Sample description nTPM
Caudate
nTPM: 35.6
Samples: 4

Max nTPM: 37.4
Min nTPM: 31.4
Sample A Female 37.4
Sample B Female 37.2
Sample C Male 36.4
Sample D Male 31.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org