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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:118.4 nTPM
FANTOM5:154.1 Scaled Tags Per Million
Pig:83.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA005944Antibody CAB004349Antibody CAB013087Antibody CAB016059
Glial cells HighHighNot detectedHigh
Neuronal cells -MediumMediumHigh








CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 118.4
Samples: 246

Max nTPM: 199.9
Min nTPM: 73.7
Std nTPM: 21.2
Median nTPM: 113.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 199.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 188.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 182.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 180.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 179.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 176.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 172.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 170.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 169.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 169.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 165.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 164.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 162.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 160.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 158.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 157.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 155.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 151.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 150.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 149.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 149.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 149.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 149.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 148.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 147.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 146.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 145.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 145.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 145.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 144.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 144.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 144.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 144.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 143.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 141.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 141.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 141.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 140.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 140.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 138.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 136.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 136.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 135.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 135.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 134.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 133.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 133.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 133.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 133.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 133.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 132.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 132.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 130.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 130.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 129.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 129.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 128.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 128.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 128.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 128.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 127.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 127.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 127.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 127.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 127.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 127.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 126.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 126.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 126.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 125.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 125.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 125.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 125.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 125.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 124.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 124.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 124.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 124.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 123.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 122.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 122.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 121.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 121.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 121.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 121.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 121.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 121.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 120.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 120.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 120.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 119.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 119.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 119.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 119.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 119.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 119.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 119.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 118.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 118.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 118.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 118.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 118.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 117.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 117.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 117.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 117.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 117.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 117.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 117.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 117.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 116.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 116.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 116.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 116.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 116.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 116.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 115.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 115.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 114.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 114.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 114.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 114.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 114.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 113.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 113.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 113.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 113.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 113.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 113.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 112.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 112.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 112.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 112.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 112.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 112.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 112.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 111.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 111.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 111.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 111.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 111.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 111.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 110.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 110.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 110.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 110.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 109.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 109.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 109.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 109.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 109.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 109.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 108.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 108.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 108.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 108.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 108.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 108.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 108.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 108.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 108.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 107.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 107.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 107.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 107.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 107.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 106.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 106.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 106.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 106.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 106.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 106.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 106.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 105.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 105.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 105.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 105.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 105.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 104.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 104.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 104.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 104.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 104.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 103.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 103.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 103.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 103.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 102.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 102.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 102.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 102.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 102.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 102.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 102.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 102.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 102.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 101.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 101.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 101.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 101.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 101.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 101.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 100.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 100.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 100.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 100.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 100.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 100.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 100.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 99.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 99.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 99.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 97.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 97.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 97.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 97.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 97.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 96.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 96.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 96.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 95.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 95.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 95.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 95.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 95.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 95.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 94.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 93.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 93.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 93.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 93.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 92.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 91.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 91.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 90.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 90.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 90.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 89.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 89.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 89.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 88.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 87.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 84.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 84.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 83.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 73.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

154.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 154.1
FF:10164-103B2 76 years, female 154.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.0
Pig sample Sample description nTPM
Caudate
nTPM: 83.0
Samples: 4

Max nTPM: 99.3
Min nTPM: 68.6
Sample A Female 70.5
Sample B Female 93.5
Sample C Male 99.3
Sample D Male 68.6

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