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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:86.9 nTPM
FANTOM5:99.5 Scaled Tags Per Million
Pig:80.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB010162Antibody CAB025656
Glial cells LowMedium
Neuronal cells LowMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 86.9
Samples: 246

Max nTPM: 240.8
Min nTPM: 14.5
Std nTPM: 32.2
Median nTPM: 81.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 240.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 201.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 173.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 172.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 163.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 161.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 158.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 158.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 156.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 154.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 153.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 147.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 147.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 146.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 146.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 140.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 139.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 137.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 136.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 135.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 134.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 130.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 130.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 130.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 129.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 128.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 125.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 124.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 124.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 123.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 122.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 121.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 120.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 120.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 120.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 119.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 119.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 119.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 118.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 117.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 117.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 116.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 116.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 114.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 114.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 114.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 114.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 111.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 110.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 109.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 109.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 109.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 109.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 109.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 108.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 108.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 108.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 107.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 106.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 106.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 105.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 105.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 105.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 104.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 103.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 103.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 103.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 102.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 102.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 101.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 100.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 100.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 100.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 99.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 99.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 99.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 98.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 98.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 98.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 98.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 98.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 97.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 96.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 95.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 95.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 95.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 95.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 94.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 93.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 92.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 91.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 91.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 91.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 91.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 90.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 90.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 90.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 90.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 90.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 90.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 89.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 89.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 89.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 88.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 88.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 88.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 88.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 88.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 88.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 88.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 87.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 86.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 86.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 86.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 85.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 85.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 84.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 84.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 83.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 82.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 82.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 82.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 82.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 81.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 80.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 80.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 80.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 79.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 79.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 79.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 79.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 79.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 79.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 79.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 78.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 78.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 77.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 77.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 77.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 76.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 76.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 76.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 76.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 76.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 75.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 74.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 74.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 73.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 73.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 73.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 72.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 72.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 71.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 71.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 71.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 71.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 70.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 70.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 69.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 69.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 69.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 68.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 68.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 67.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 67.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 66.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 66.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 66.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 66.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 66.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 65.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 65.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 65.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 65.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 65.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 64.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 64.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 64.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 64.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 64.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 64.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 63.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 63.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 63.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 63.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 63.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 63.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 62.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 62.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 62.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 62.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 61.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 61.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 61.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 60.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 59.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 59.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 59.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 59.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 59.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 59.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 58.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 58.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 58.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 58.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 57.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 57.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 57.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 56.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 56.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 56.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 55.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 55.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 55.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 54.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 54.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 54.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 54.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 53.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 53.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 53.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 53.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 52.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 52.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 52.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 51.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 51.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 48.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 48.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 45.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 44.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 44.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 42.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 42.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 42.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 42.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 42.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 41.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 40.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 40.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 40.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 39.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 37.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 35.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 27.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 14.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

99.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 99.5
FF:10164-103B2 76 years, female 99.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.8
Pig sample Sample description nTPM
Caudate
nTPM: 80.9
Samples: 4

Max nTPM: 99.7
Min nTPM: 61.3
Sample A Female 61.3
Sample B Female 85.0
Sample C Male 99.7
Sample D Male 77.4

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