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LRRC10B
HPA
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:56.3 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:40.7 nTPM

CAUDATE - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047619
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 56.3
Samples: 246

Max nTPM: 143.5
Min nTPM: 0.9
Std nTPM: 25.7
Median nTPM: 55.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 143.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 112.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 109.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 109.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 108.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 106.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 106.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 105.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 104.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 104.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 102.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 101.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 101.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 100.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 99.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 99.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 99.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 98.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 96.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 96.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 95.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 95.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 94.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 93.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 92.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 90.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 90.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 88.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 88.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 87.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 87.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 87.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 87.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 86.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 86.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 85.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 85.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 84.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 84.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 83.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 81.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 81.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 80.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 80.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 80.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 79.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 79.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 79.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 79.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 78.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 78.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 78.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 77.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 77.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 77.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 76.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 76.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 76.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 76.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 75.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 74.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 74.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 74.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 73.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 73.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 73.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 72.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 72.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 72.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 71.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 71.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 71.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 70.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 70.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 70.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 69.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 69.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 69.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 69.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 68.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 68.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 67.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 67.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 66.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 66.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 66.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 66.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 65.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 65.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 65.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 65.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 64.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 64.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 64.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 64.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 64.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 63.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 62.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 62.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 62.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 61.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 61.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 61.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 61.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 61.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 61.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 60.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 60.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 59.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 59.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 58.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 58.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 58.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 58.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 56.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 56.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 56.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 56.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 56.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 56.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 55.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 55.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 55.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 55.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 55.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 55.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 54.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 54.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 54.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 54.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 54.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 54.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 53.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 53.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 53.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 53.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 53.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 52.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 52.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 51.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 51.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 50.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 49.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 48.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 48.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 48.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 47.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 47.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 46.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 46.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 46.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 45.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 45.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 45.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 45.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 44.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 44.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 44.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 43.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 43.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 43.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 43.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 42.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 41.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 41.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 41.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 41.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 40.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 40.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 40.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 40.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 39.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 38.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 38.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 38.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 38.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 37.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 37.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 37.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 37.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 36.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 36.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 36.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 36.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 36.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 36.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 36.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 35.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 35.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 35.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 34.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 34.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 33.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 33.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 33.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 33.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 33.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 32.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 31.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 31.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 30.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 30.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 30.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 29.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 29.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 29.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 29.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 28.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 28.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 28.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 27.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 27.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 26.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 26.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 25.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 25.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 25.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 25.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 24.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 24.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 24.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 23.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 23.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 22.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 22.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 21.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 21.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 21.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 18.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 18.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 18.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 17.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 17.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 17.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 16.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 15.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 15.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 15.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 13.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 13.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 13.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 10.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 10.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 9.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 7.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 0.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.2
FF:10164-103B2 76 years, female 28.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.7
Pig sample Sample description nTPM
Caudate
nTPM: 40.6
Samples: 4

Max nTPM: 49.9
Min nTPM: 30.6
Sample A Female 30.6
Sample B Female 40.3
Sample C Male 49.9
Sample D Male 41.7

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