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RNF208
HPA
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  • RNF208
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:68.9 nTPM
FANTOM5:79.1 Scaled Tags Per Million
Pig:44.4 nTPM

CAUDATE - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA021256Antibody HPA021429
Glial cells LowNot detected
Neuronal cells LowNot detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 68.9
Samples: 246

Max nTPM: 167.0
Min nTPM: 25.1
Std nTPM: 20.9
Median nTPM: 66.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 167.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 135.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 133.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 125.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 124.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 117.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 114.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 110.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 110.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 109.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 109.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 108.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 108.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 107.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 106.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 106.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 105.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 104.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 103.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 102.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 99.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 98.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 97.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 96.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 95.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 95.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 94.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 92.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 92.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 91.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 90.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 89.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 88.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 88.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 88.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 88.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 87.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 87.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 87.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 87.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 85.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 85.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 85.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 85.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 84.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 84.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 84.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 84.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 84.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 84.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 84.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 83.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 83.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 82.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 82.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 82.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 81.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 81.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 80.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 80.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 79.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 79.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 79.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 78.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 78.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 77.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 77.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 77.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 76.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 76.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 75.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 75.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 75.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 75.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 74.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 74.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 74.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 74.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 74.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 74.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 74.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 74.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 73.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 73.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 73.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 73.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 72.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 72.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 72.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 72.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 72.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 72.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 72.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 72.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 72.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 71.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 71.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 71.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 71.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 70.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 70.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 70.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 70.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 70.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 70.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 70.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 70.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 69.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 69.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 69.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 69.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 68.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 68.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 68.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 68.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 68.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 68.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 68.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 67.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 67.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 67.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 67.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 66.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 66.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 66.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 66.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 66.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 66.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 66.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 66.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 65.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 65.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 65.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 65.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 65.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 65.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 65.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 64.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 64.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 64.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 64.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 64.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 64.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 64.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 63.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 63.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 62.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 62.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 62.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 62.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 62.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 62.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 62.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 62.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 61.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 61.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 61.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 61.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 61.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 61.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 60.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 60.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 60.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 60.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 59.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 59.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 59.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 59.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 59.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 59.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 59.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 59.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 59.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 58.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 58.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 58.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 58.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 58.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 57.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 57.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 57.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 57.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 56.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 56.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 56.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 56.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 55.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 55.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 55.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 54.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 54.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 53.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 53.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 53.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 53.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 53.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 52.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 52.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 52.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 52.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 51.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 51.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 51.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 51.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 50.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 50.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 50.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 50.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 50.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 49.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 48.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 48.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 47.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 47.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 47.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 46.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 45.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 44.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 44.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 44.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 44.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 43.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 43.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 43.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 42.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 41.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 40.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 39.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 39.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 39.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 38.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 37.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 36.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 36.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 36.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 36.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 34.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 33.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 33.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 33.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 33.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 32.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 32.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 31.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 25.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 25.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

79.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 79.1
FF:10164-103B2 76 years, female 79.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.4
Pig sample Sample description nTPM
Caudate
nTPM: 44.4
Samples: 4

Max nTPM: 58.3
Min nTPM: 31.5
Sample A Female 31.5
Sample B Female 48.5
Sample C Male 58.3
Sample D Male 39.4

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