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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:52.2 nTPM
GTEx:108.1 nTPM
FANTOM5:82.2 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA008467Antibody HPA041113Antibody CAB040571Antibody CAB080149Antibody CAB080151Antibody CAB080152
Glial cells HighMediumNot detectedNot detectedNot detectedNot detected
Neuronal cells HighMediumMediumMediumNot detectedLow













HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.2
Sample id Sample description nTPM
Hippocampus
nTPM: 52.2
1898 Male, age 80, left hemisphere 81.4
2621 Female, age 67, right hemisphere 55.6
1855 Male, age 76, left hemisphere 52.7
1911 Female, age 85, right hemisphere 48.4
2148 Female, age 91, left hemisphere 43.0
2529 Female, age 94, left hemisphere 32.3

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 108.1
Samples: 197

Max nTPM: 287.4
Min nTPM: 31.5
Std nTPM: 51.5
Median nTPM: 97.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 287.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 265.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 263.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 259.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 238.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 236.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 223.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 217.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 214.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 213.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 206.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 201.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 195.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 192.9
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 189.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 188.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 188.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 185.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 184.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 174.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 169.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 169.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 166.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 166.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 165.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 161.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 160.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 160.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 159.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 159.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 158.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 158.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 157.9
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 153.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 152.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 151.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 149.5
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 147.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 147.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 146.5
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 145.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 145.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 144.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 144.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 143.4
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 142.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 139.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 137.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 137.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 136.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 136.3
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 136.0
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 136.0
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 135.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 135.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 134.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 134.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 133.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 130.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 128.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 126.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 126.5
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 126.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 125.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 125.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 125.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 125.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 124.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 124.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 123.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 122.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 120.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 119.4
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 118.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 118.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 117.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 117.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 117.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 116.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 114.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 114.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 113.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 112.4
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 111.6
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 110.4
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 110.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 110.3
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 109.9
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 109.0
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 108.2
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 108.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 105.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 103.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 102.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 101.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 99.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 98.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 97.6
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 97.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 97.6
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 97.2
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 97.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 96.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 94.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 93.5
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 92.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 92.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 92.2
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 91.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 91.5
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 90.4
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 89.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 89.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 89.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 88.5
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 87.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 87.1
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 87.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 84.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 84.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 84.1
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 83.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 82.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 81.8
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 81.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 79.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 78.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 78.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 78.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 77.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 76.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 75.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 75.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 74.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 73.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 72.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 72.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 72.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 72.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 72.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 71.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 71.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 71.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 70.9
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 70.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 70.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 70.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 68.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 67.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 67.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 67.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 66.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 66.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 66.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 66.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 65.8
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 64.9
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 64.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 64.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 63.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 62.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 62.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 60.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 59.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 59.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 58.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 58.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 58.0
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 56.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 56.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 56.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 55.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 55.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 54.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 54.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 52.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 51.8
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 51.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 50.7
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 47.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 47.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 46.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 45.1
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 42.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 42.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 41.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 40.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 39.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 38.2
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 36.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 36.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 35.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 34.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 33.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 32.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 32.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 31.5
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

82.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 82.2
FF:10169-103B7 60 years, female 127.7
FF:10153-102I9 76 years, female 36.6

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