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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:310.6 nTPM
FANTOM5:568.6 Scaled Tags Per Million
Pig:539.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003868Antibody CAB005284
Glial cells LowNot detected
Neuronal cells LowLow




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

310.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 310.6
Samples: 246

Max nTPM: 660.9
Min nTPM: 93.9
Std nTPM: 104.3
Median nTPM: 298.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 660.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 633.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 626.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 626.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 617.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 613.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 578.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 564.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 562.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 529.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 519.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 508.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 495.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 492.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 489.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 482.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 481.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 477.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 474.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 471.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 463.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 448.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 448.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 443.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 443.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 442.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 436.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 430.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 428.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 426.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 422.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 421.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 420.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 417.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 417.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 417.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 416.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 416.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 414.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 413.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 412.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 412.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 401.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 401.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 397.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 395.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 392.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 391.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 391.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 386.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 386.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 386.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 377.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 376.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 376.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 375.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 374.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 371.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 371.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 367.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 361.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 360.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 359.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 359.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 359.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 358.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 358.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 356.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 355.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 354.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 354.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 354.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 350.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 349.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 346.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 344.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 343.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 343.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 341.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 340.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 339.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 338.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 337.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 335.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 335.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 332.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 332.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 331.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 328.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 327.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 327.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 327.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 326.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 326.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 323.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 323.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 322.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 321.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 319.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 319.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 319.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 319.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 316.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 316.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 315.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 315.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 314.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 312.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 311.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 311.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 310.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 309.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 307.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 307.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 307.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 306.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 304.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 303.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 302.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 300.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 300.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 299.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 298.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 298.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 298.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 294.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 294.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 293.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 293.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 292.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 291.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 289.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 289.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 288.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 287.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 286.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 285.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 283.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 283.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 282.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 282.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 281.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 280.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 279.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 278.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 278.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 277.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 276.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 276.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 276.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 276.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 275.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 274.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 274.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 274.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 274.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 274.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 270.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 270.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 270.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 268.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 266.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 265.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 265.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 263.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 263.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 262.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 261.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 255.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 254.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 253.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 253.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 249.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 245.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 240.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 239.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 239.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 238.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 238.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 238.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 237.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 237.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 236.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 235.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 235.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 233.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 233.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 232.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 232.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 230.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 229.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 228.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 226.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 226.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 225.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 225.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 224.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 224.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 224.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 221.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 220.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 218.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 214.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 213.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 212.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 212.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 211.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 211.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 211.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 209.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 208.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 206.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 197.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 196.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 195.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 195.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 192.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 191.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 187.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 185.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 185.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 184.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 184.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 182.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 182.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 181.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 180.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 179.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 179.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 179.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 178.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 176.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 174.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 173.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 173.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 169.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 157.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 156.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 152.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 147.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 144.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 143.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 133.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 125.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 99.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 93.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

568.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 568.6
FF:10164-103B2 76 years, female 568.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

539.8
Pig sample Sample description nTPM
Caudate
nTPM: 539.8
Samples: 4

Max nTPM: 674.2
Min nTPM: 446.9
Sample A Female 446.9
Sample B Female 575.0
Sample C Male 674.2
Sample D Male 463.2

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