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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:165.1 nTPM
GTEx:183.7 nTPM
FANTOM5:47.8 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA000531
Glial cells Medium
Neuronal cells High



HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.1
Sample id Sample description nTPM
Hippocampus
nTPM: 165.1
2621 Female, age 67, right hemisphere 201.9
1898 Male, age 80, left hemisphere 186.3
2148 Female, age 91, left hemisphere 186.3
1855 Male, age 76, left hemisphere 144.9
2529 Female, age 94, left hemisphere 137.5
1911 Female, age 85, right hemisphere 133.6

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 183.7
Samples: 197

Max nTPM: 520.6
Min nTPM: 13.6
Std nTPM: 91.8
Median nTPM: 182.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 520.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 485.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 426.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 400.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 379.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 356.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 345.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 344.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 337.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 333.5
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 326.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 326.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 326.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 325.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 325.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 315.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 304.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 297.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 296.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 294.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 294.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 292.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 283.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 282.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 277.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 276.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 275.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 273.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 272.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 270.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 266.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 265.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 265.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 262.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 262.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 259.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 256.4
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 256.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 256.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 254.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 253.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 251.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 250.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 250.6
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 250.6
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 250.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 250.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 250.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 249.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 248.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 243.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 242.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 240.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 240.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 238.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 237.1
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 236.0
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 232.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 230.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 228.7
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 228.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 228.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 228.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 227.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 227.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 226.9
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 218.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 218.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 217.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 216.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 216.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 216.0
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 214.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 213.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 213.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 212.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 211.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 208.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 207.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 207.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 207.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 206.5
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 205.1
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 202.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 201.8
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 201.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 198.3
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 196.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 196.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 194.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 194.5
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 192.8
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 191.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 189.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 186.9
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 184.6
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 184.5
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 184.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 182.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 182.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 181.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 180.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 179.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 178.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 176.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 176.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 171.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 167.2
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 166.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 164.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 163.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 163.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 162.5
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 162.2
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 161.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 161.7
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 161.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 160.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 160.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 160.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 159.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 155.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 154.5
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 153.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 151.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 151.5
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 148.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 147.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 146.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 143.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 143.4
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 143.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 142.8
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 141.8
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 139.6
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 139.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 138.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 136.2
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 135.8
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 133.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 133.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 128.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 126.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 124.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 123.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 122.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 120.4
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 119.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 116.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 116.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 115.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 111.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 111.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 108.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 108.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 107.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 105.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 103.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 102.9
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 100.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 94.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 93.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 91.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 81.0
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 80.9
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 80.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 78.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 75.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 69.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 68.6
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 65.9
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 63.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 61.8
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 61.0
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 58.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 57.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 56.4
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 55.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 54.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 51.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 51.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 51.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 50.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 50.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 49.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 42.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 38.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 36.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 36.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 35.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 35.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 34.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 33.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 29.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 29.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 17.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 13.6
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

47.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 47.8
FF:10169-103B7 60 years, female 55.0
FF:10153-102I9 76 years, female 40.7

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