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  • PCP4L1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Neuronal projections: Low
Synapses: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:169.4 nTPM
FANTOM5:169.2 Scaled Tags Per Million
Pig:100.3 nTPM

CAUDATE - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA052833
Glial cells Not detected
Neuronal cells Low
Neuronal projections Low
Synapses Low

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA052833
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 169.4
Samples: 246

Max nTPM: 547.8
Min nTPM: 5.8
Std nTPM: 127.2
Median nTPM: 149.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 547.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 531.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 493.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 453.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 451.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 441.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 440.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 422.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 421.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 420.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 415.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 410.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 391.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 387.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 383.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 381.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 381.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 377.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 374.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 369.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 362.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 357.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 356.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 355.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 354.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 354.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 351.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 348.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 346.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 343.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 343.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 341.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 341.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 340.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 331.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 329.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 326.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 324.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 321.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 320.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 319.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 319.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 313.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 312.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 310.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 307.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 306.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 302.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 300.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 298.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 297.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 296.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 294.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 287.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 283.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 282.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 272.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 270.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 267.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 266.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 264.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 264.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 263.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 254.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 253.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 250.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 249.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 244.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 239.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 235.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 235.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 234.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 231.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 230.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 230.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 228.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 224.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 223.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 221.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 220.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 219.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 218.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 217.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 209.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 208.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 204.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 203.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 201.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 199.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 197.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 197.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 195.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 192.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 191.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 187.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 182.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 182.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 182.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 182.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 181.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 178.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 178.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 175.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 173.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 173.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 172.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 171.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 170.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 167.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 166.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 164.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 162.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 159.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 158.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 157.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 157.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 156.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 154.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 154.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 153.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 153.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 151.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 151.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 147.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 146.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 146.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 144.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 141.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 140.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 140.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 140.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 139.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 138.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 137.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 137.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 133.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 126.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 125.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 124.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 124.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 120.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 116.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 116.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 108.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 108.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 107.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 107.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 105.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 104.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 104.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 104.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 103.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 100.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 100.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 99.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 98.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 96.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 95.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 90.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 89.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 86.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 81.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 81.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 80.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 79.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 77.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 74.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 74.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 72.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 70.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 69.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 69.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 68.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 67.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 66.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 66.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 64.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 62.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 60.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 59.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 58.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 58.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 58.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 57.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 57.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 56.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 55.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 55.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 54.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 54.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 52.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 51.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 50.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 46.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 46.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 44.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 42.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 41.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 41.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 40.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 39.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 38.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 37.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 36.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 35.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 34.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 33.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 33.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 33.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 32.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 32.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 31.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 31.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 29.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 28.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 28.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 26.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 26.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 23.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 23.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 23.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 22.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 21.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 20.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 20.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 19.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 19.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 18.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 17.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 16.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 16.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 16.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 16.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 15.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 15.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 14.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 13.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 11.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 10.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 10.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 10.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 10.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 8.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 7.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 6.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 5.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

169.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 169.2
FF:10164-103B2 76 years, female 169.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.3
Pig sample Sample description nTPM
Caudate
nTPM: 100.3
Samples: 4

Max nTPM: 143.0
Min nTPM: 65.1
Sample A Female 65.1
Sample B Female 80.3
Sample C Male 143.0
Sample D Male 112.6

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