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YJEFN3
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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Neuronal projections: Not detected
Synapses: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:87.1 nTPM
GTEx:144.8 nTPM
FANTOM5:48.0 Scaled Tags Per Million

HIPPOCAMPUS - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA060789
Glial cells Not detected
Neuronal cells Medium
Neuronal projections Medium
Synapses Not detected

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA060789
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.1
Sample id Sample description nTPM
Hippocampus
nTPM: 87.1
1898 Male, age 80, left hemisphere 117.6
2621 Female, age 67, right hemisphere 104.8
1911 Female, age 85, right hemisphere 84.3
1855 Male, age 76, left hemisphere 82.0
2148 Female, age 91, left hemisphere 72.1
2529 Female, age 94, left hemisphere 62.0

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 144.8
Samples: 197

Max nTPM: 641.5
Min nTPM: 3.3
Std nTPM: 95.9
Median nTPM: 131.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 641.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 570.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 419.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 396.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 388.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 362.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 358.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 307.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 297.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 294.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 292.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 291.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 291.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 286.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 281.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 271.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 271.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 267.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 266.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 266.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 263.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 257.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 256.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 253.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 251.8
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 250.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 249.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 243.8
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 239.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 231.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 229.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 228.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 219.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 218.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 218.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 217.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 216.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 212.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 211.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 203.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 201.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 198.0
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 197.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 197.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 195.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 193.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 193.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 191.5
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 187.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 187.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 186.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 185.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 183.8
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 182.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 181.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 180.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 180.5
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 180.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 179.0
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 178.2
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 175.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 175.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 174.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 174.6
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 173.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 172.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 171.1
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 170.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 170.5
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 169.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 165.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 165.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 163.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 163.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 162.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 159.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 158.6
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 158.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 156.6
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 155.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 155.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 155.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 154.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 152.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 149.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 145.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 145.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 142.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 142.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 142.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 136.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 136.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 135.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 133.8
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 133.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 133.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 132.8
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 132.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 131.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 130.6
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 129.2
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 129.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 128.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 127.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 126.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 126.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 126.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 125.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 124.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 123.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 123.3
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 121.2
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 121.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 119.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 119.2
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 117.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 115.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 115.7
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 114.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 110.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 108.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 106.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 106.5
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 106.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 106.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 102.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 100.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 99.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 99.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 98.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 98.1
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 96.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 95.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 95.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 93.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 92.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 90.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 90.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 88.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 86.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 85.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 83.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 83.5
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 82.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 80.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 80.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 77.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 75.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 75.1
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 74.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 73.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 73.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 70.5
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 69.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 69.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 68.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 64.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 64.3
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 64.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 62.2
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 58.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 57.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 57.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 56.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 54.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 53.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 52.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 50.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 48.0
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 47.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 44.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 43.9
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 42.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 41.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 40.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 36.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 35.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 33.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 32.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 32.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 31.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 31.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 30.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 24.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 23.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 20.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 17.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 16.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 16.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 14.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 14.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 13.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 13.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 12.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 11.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 9.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 3.3
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

48.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 48.0
FF:10169-103B7 60 years, female 67.5
FF:10153-102I9 76 years, female 28.5

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


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