Transcription factor landscape - Cell line - Rhabdoid
14 different cell lines are representing rhabdoid in the atlas, 13 cell lines belong comes from malignant rhabdoid tumours and one is from an atypical teratoid rhabdoid tumor, find more details about the different cell lines here. For each of the rhabdoid related cell line, up- and downregulated cancer-related pathways can be explored based on the transcriptomics data.
The mean value of the different cell lines are used as representation, when classifying gene expression based on specificity in the different cancer types represented by cell lines. To explore the expression profile in the indivudial cell lines- click the bar in the barchard and you will reach the overivew of the different cell lines.
Here we provide the expression overview of all 39 transcription factors that show elevated expression levels in rhabdoid compared to other cancer cell lines. The gene expression overview, across different cancer types, is accopanied by the top 3 nearest neighbours based on RNA expression and correlation in the clustering analysis.