MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:116.9 nTPM
HPA Brain:75.4 nTPM
GTEx:116.9 nTPM
FANTOM5:17.6 Scaled Tags Per Million
Pig:30.0 nTPM
Mouse:32.8 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 75.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.8
2586 Male, age 75, left hemisphere 103.1
2828 Female, age 72, unknown 77.4
2219 Male, age 76, both hemispheres 69.3
2019 Male, age 18, unknown 68.7
1827 Male, age 72, unknown 68.1
1870 Female, age 42, unknown 58.3
2666 Male, age 74, left hemisphere 57.7
1833 Male, age 53, unknown 56.7
2411 Female, age 72, unknown 56.6
1830 Male, age 51, unknown 51.9
Dorsal raphe nucleus
nTPM: 63.7
2298 Female, age 72, unknown 71.4
2047 Male, age 72, unknown 69.4
2750 Male, age 76, both hemispheres 64.4
1828 Male, age 53, unknown 57.2
2016 Female, age 72, unknown 56.2
Inferior colliculus
nTPM: 53.8
2097 Female, age 72, unknown 60.7
1890 Male, age 53, unknown 56.8
1848 Female, age 42, unknown 53.2
2849 Male, age 72, unknown 44.5
Median raphe nucleus
nTPM: 64.6
2220 Male, age 76, midline 64.6
Periaquaductal grey, anterior
nTPM: 75.4
1795 Male, age 51, unknown 80.6
2502 Female, age 75, unknown 79.3
1947 Male, age 18, unknown 66.2
Periaquaductal grey, dorsal
nTPM: 57.0
1840 Male, age 53, unknown 61.7
2464 Female, age 72, unknown 58.1
1831 Male, age 72, unknown 55.5
2850 Male, age 76, both hemispheres 52.7
Periaquaductal grey, lateral
nTPM: 56.7
2272 Male, age 74, both hemispheres 62.2
2053 Male, age 18, unknown 57.0
2140 Male, age 76, both hemispheres 51.1
Pretectal area
nTPM: 67.5
1816 Male, age 51, unknown 90.7
2007 Male, age 72, unknown 80.4
1944 Female, age 72, unknown 79.5
1817 Female, age 42, unknown 73.7
1815 Male, age 53, unknown 72.4
2273 Male, age 74, both hemispheres 65.0
2667 Female, age 75, unknown 62.4
2407 Male, age 75, both hemispheres 60.9
2224 Female, age 72, unknown 55.3
2825 Male, age 18, unknown 54.3
2316 Male, age 76, right hemisphere 48.0
Red nucleus
nTPM: 64.6
2588 Male, age 74, left hemisphere 71.1
1904 Male, age 53, unknown 69.1
2785 Male, age 18, unknown 68.7
2769 Male, age 72, unknown 68.5
2503 Female, age 72, unknown 65.1
2725 Female, age 75, unknown 64.7
1865 Male, age 51, unknown 64.6
2227 Male, age 72, unknown 64.6
2584 Male, age 75, left hemisphere 61.5
1954 Female, age 42, unknown 61.2
1821 Female, age 72, unknown 60.3
2823 Male, age 76, right hemisphere 56.2
Substantia nigra
nTPM: 75.0
1916 Female, age 42, unknown 101.8
1851 Male, age 51, unknown 86.2
1889 Female, age 72, unknown 77.4
2665 Male, age 74, both hemispheres 75.7
2699 Male, age 18, unknown 72.1
1941 Male, age 53, unknown 71.0
2583 Male, age 75, right hemisphere 70.7
2409 Female, age 72, unknown 69.4
2590 Female, age 75, unknown 65.8
2241 Male, age 72, unknown 60.3
Superior colliculus
nTPM: 69.4
2261 Male, age 18, unknown 86.3
2087 Female, age 72, unknown 83.9
2664 Male, age 75, both hemispheres 82.4
1796 Male, age 53, unknown 78.0
2668 Female, age 75, unknown 77.1
1995 Male, age 72, unknown 70.3
1913 Female, age 42, unknown 63.5
2587 Male, age 74, left hemisphere 56.3
1839 Male, age 51, unknown 50.4
1895 Male, age 76, right hemisphere 46.2
Ventral tegmental area
nTPM: 69.6
1915 Female, age 42, unknown 76.5
2410 Female, age 72, unknown 73.0
2218 Male, age 76, both hemispheres 70.0
1942 Male, age 51, unknown 69.1
2223 Female, age 72, unknown 68.6
2021 Male, age 53, unknown 60.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 116.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 116.9
Samples: 139

Max nTPM: 253.6
Min nTPM: 43.7
Std nTPM: 33.4
Median nTPM: 112.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 253.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 197.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 189.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 188.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 182.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 179.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 176.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 175.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 174.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 173.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 171.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 17.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.6
FF:10158-103A5 76 years, female 17.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.2
Samples: 4

Max nTPM: 34.9
Min nTPM: 23.1
Sample A Female 34.9
Sample B Female 28.2
Sample C Male 30.6
Sample D Male 23.1
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 39.7
Min nTPM: 23.7
Sample A Female 39.7
Sample B Female 28.1
Sample C Male 28.5
Sample D Male 23.7
Periaqueductal gray
nTPM: 24.7
Samples: 3

Max nTPM: 29.2
Min nTPM: 21.4
Sample B Female 23.4
Sample C Male 29.2
Sample D Male 21.4
Superior colliculi
nTPM: 29.4
Samples: 4

Max nTPM: 34.0
Min nTPM: 24.9
Sample A Female 31.6
Sample B Female 34.0
Sample C Male 27.1
Sample D Male 24.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.8
Samples: 4

Max nTPM: 36.8
Min nTPM: 29.1
Sample A Male 36.8
Sample B Male 29.2
Sample C Female 29.1
Sample D Female 36.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
74881790 Antisense, RP_060315_04_D03, Mouse strain C57BL/6J (56 days, male) 2.3
69528052 Antisense, RP_050421_03_A05, Mouse strain C57BL/6J (56 days, male) 0.3

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