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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:221.1 nTPM
HPA:221.1 nTPM
GTEx:126.1 nTPM
FANTOM5:814.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031032Antibody HPA031033
Glandular cells HighMedium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

221.1
overview
Male, age 65
Small intestine sample 232
nTPM: 219.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 358.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 120.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 186

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 126.1
Samples: 187

Max nTPM: 1017.0
Min nTPM: 0.0
Std nTPM: 167.0
Median nTPM: 42.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1017.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 660.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 587.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 552.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 542.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 525.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 514.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 514.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 477.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 462.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 449.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 437.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 425.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 421.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 416.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 406.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 406.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 404.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 402.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 394.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 384.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 358.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 353.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 342.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 336.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 328.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 328.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 316.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 306.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 301.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 290.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 283.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 277.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 264.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 244.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 244.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 243.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 235.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 234.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 226.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 223.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 221.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 212.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 211.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 205.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 191.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 187.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 186.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 186.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 175.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 172.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 172.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 171.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 160.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 153.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 150.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 149.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 148.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 148.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 146.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 142.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 142.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 141.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 133.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 132.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 130.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 130.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 122.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 116.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 113.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 113.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 111.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 107.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 103.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 102.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 99.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 97.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 93.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 92.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 90.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 88.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 86.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 85.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 81.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 72.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 70.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 68.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 67.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 61.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 60.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 51.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 50.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 44.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 42.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 38.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 37.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 37.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 34.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 34.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 33.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 30.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 30.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 30.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 26.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 25.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 23.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 21.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 19.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 18.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 18.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 18.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 17.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 17.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 17.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 16.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 16.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 14.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 14.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 13.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 12.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 12.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 10.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 10.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 9.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 8.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 8.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 8.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 7.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 7.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 6.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 6.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 6.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 6.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 6.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 5.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 5.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 5.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 5.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 5.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 4.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 4.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 4.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 3.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 3.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 3.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 3.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 3.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 2.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 2.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 0.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 0.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 0.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 0.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 0.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 0.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 0.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 0.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 0.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 0.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 0.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 0.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 0.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 0.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 0.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 0.2
GTEX-1192X-2526-SM-59868 50-59 years, male 0.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

814.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 814.3
FF:10024-101D6 15,40,85 years, mixed 814.3

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