MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.0 nTPM
HPA Brain:104.1 nTPM
GTEx:42.0 nTPM
FANTOM5:11.4 Scaled Tags Per Million
Pig:35.1 nTPM
Mouse:35.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 104.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.3
2019 Male, age 18, unknown 107.6
2828 Female, age 72, unknown 83.8
2586 Male, age 75, left hemisphere 76.0
2666 Male, age 74, left hemisphere 65.6
2219 Male, age 76, both hemispheres 62.2
1827 Male, age 72, unknown 58.8
2411 Female, age 72, unknown 39.0
1870 Female, age 42, unknown 38.8
1833 Male, age 53, unknown 37.0
1830 Male, age 51, unknown 34.2
Dorsal raphe nucleus
nTPM: 36.9
2750 Male, age 76, both hemispheres 44.9
2298 Female, age 72, unknown 40.0
2047 Male, age 72, unknown 36.9
1828 Male, age 53, unknown 35.8
2016 Female, age 72, unknown 26.7
Inferior colliculus
nTPM: 43.4
1890 Male, age 53, unknown 50.5
2097 Female, age 72, unknown 47.2
1848 Female, age 42, unknown 42.3
2849 Male, age 72, unknown 33.6
Median raphe nucleus
nTPM: 46.0
2220 Male, age 76, midline 46.0
Periaquaductal grey, anterior
nTPM: 65.3
1795 Male, age 51, unknown 88.6
2502 Female, age 75, unknown 57.8
1947 Male, age 18, unknown 49.4
Periaquaductal grey, dorsal
nTPM: 43.1
1831 Male, age 72, unknown 57.2
1840 Male, age 53, unknown 39.3
2464 Female, age 72, unknown 38.1
2850 Male, age 76, both hemispheres 37.9
Periaquaductal grey, lateral
nTPM: 35.3
2053 Male, age 18, unknown 37.1
2140 Male, age 76, both hemispheres 37.1
2272 Male, age 74, both hemispheres 31.8
Pretectal area
nTPM: 104.1
1944 Female, age 72, unknown 205.8
1816 Male, age 51, unknown 195.0
2007 Male, age 72, unknown 176.4
1817 Female, age 42, unknown 174.3
1815 Male, age 53, unknown 143.1
2667 Female, age 75, unknown 72.2
2273 Male, age 74, both hemispheres 39.3
2407 Male, age 75, both hemispheres 38.8
2224 Female, age 72, unknown 35.7
2825 Male, age 18, unknown 34.5
2316 Male, age 76, right hemisphere 30.1
Red nucleus
nTPM: 49.7
2785 Male, age 18, unknown 106.6
2588 Male, age 74, left hemisphere 62.5
2725 Female, age 75, unknown 53.3
2584 Male, age 75, left hemisphere 50.8
2503 Female, age 72, unknown 44.9
2823 Male, age 76, right hemisphere 44.6
1954 Female, age 42, unknown 43.5
1821 Female, age 72, unknown 39.6
1865 Male, age 51, unknown 39.0
1904 Male, age 53, unknown 38.7
2769 Male, age 72, unknown 36.7
2227 Male, age 72, unknown 35.9
Substantia nigra
nTPM: 71.8
1889 Female, age 72, unknown 133.0
2665 Male, age 74, both hemispheres 106.9
1916 Female, age 42, unknown 88.5
1941 Male, age 53, unknown 85.3
1851 Male, age 51, unknown 67.8
2583 Male, age 75, right hemisphere 61.5
2590 Female, age 75, unknown 48.8
2409 Female, age 72, unknown 47.0
2241 Male, age 72, unknown 40.4
2699 Male, age 18, unknown 38.5
Superior colliculus
nTPM: 75.5
2087 Female, age 72, unknown 168.6
2668 Female, age 75, unknown 99.3
1913 Female, age 42, unknown 77.0
2261 Male, age 18, unknown 75.9
1995 Male, age 72, unknown 75.6
2664 Male, age 75, both hemispheres 66.2
1796 Male, age 53, unknown 66.0
1895 Male, age 76, right hemisphere 47.8
2587 Male, age 74, left hemisphere 39.3
1839 Male, age 51, unknown 38.8
Ventral tegmental area
nTPM: 48.9
2218 Male, age 76, both hemispheres 67.9
2410 Female, age 72, unknown 63.9
1915 Female, age 42, unknown 50.3
1942 Male, age 51, unknown 46.1
2021 Male, age 53, unknown 36.0
2223 Female, age 72, unknown 29.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 42.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.0
Samples: 139

Max nTPM: 116.7
Min nTPM: 9.7
Std nTPM: 21.8
Median nTPM: 37.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 116.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 100.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 98.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 95.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 88.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 84.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 83.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 83.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 83.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 80.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 78.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.4
FF:10158-103A5 76 years, female 11.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.7
Samples: 4

Max nTPM: 29.8
Min nTPM: 7.4
Sample A Female 29.8
Sample B Female 15.1
Sample C Male 26.5
Sample D Male 7.4
Midbrain
nTPM: 30.2
Samples: 4

Max nTPM: 67.8
Min nTPM: 8.6
Sample A Female 8.6
Sample B Female 19.6
Sample C Male 67.8
Sample D Male 24.9
Periaqueductal gray
nTPM: 18.0
Samples: 3

Max nTPM: 22.1
Min nTPM: 14.3
Sample B Female 17.6
Sample C Male 22.1
Sample D Male 14.3
Superior colliculi
nTPM: 35.1
Samples: 4

Max nTPM: 58.1
Min nTPM: 25.6
Sample A Female 26.6
Sample B Female 25.6
Sample C Male 58.1
Sample D Male 30.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 35.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.2
Samples: 4

Max nTPM: 36.8
Min nTPM: 33.4
Sample A Male 36.8
Sample B Male 33.4
Sample C Female 35.1
Sample D Female 35.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68745251 Antisense, RP_050210_01_E10, Mouse strain C57BL/6J (56 days, male) 0.3

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