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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:156.3 nTPM
HPA Brain:105.7 nTPM
GTEx:156.3 nTPM
FANTOM5:89.9 Scaled Tags Per Million
Pig:45.1 nTPM
Mouse:243.6 nTPM
Allen mouse:7.9 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.7
Sample id Sample description nTPM
Amygdala
nTPM: 97.4
2517 Female, age 94, left hemisphere 110.2
2814 Male, age 76, right hemisphere 110.2
1987 Female, age 91, left hemisphere 102.3
2514 Male, age 75, right hemisphere 82.8
2695 Female, age 67, right hemisphere 81.7
Basal amygdala
nTPM: 105.7
2685 Female, age 94, left hemisphere 128.4
2243 Female, age 91, right hemisphere 118.8
2110 Male, age 80, left hemisphere 108.7
2609 Male, age 75, right hemisphere 99.1
1955 Male, age 76, both hemispheres 96.4
2827 Female, age 67, right hemisphere 83.0
Central amygdala
nTPM: 102.6
2826 Female, age 94, left hemisphere 137.0
2515 Male, age 75, right hemisphere 102.4
2239 Male, age 80, left hemisphere 96.5
1905 Male, age 76, both hemispheres 95.9
2701 Female, age 91, right hemisphere 80.9
Corticomedial amygdala
nTPM: 105.7
2829 Male, age 80, left hemisphere 144.1
2242 Female, age 91, right hemisphere 110.4
2428 Male, age 75, right hemisphere 105.6
2429 Female, age 94, left hemisphere 102.9
2240 Male, age 76, both hemispheres 90.6
2535 Female, age 67, right hemisphere 80.4
Lateral amygdala
nTPM: 97.2
2534 Female, age 94, left hemisphere 137.6
1883 Male, age 76, both hemispheres 99.6
2516 Male, age 75, right hemisphere 89.6
2255 Female, age 91, right hemisphere 89.3
2256 Male, age 80, left hemisphere 85.5
2830 Female, age 67, right hemisphere 81.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

156.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 156.3
Samples: 152

Max nTPM: 413.7
Min nTPM: 65.7
Std nTPM: 49.9
Median nTPM: 149.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 413.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 343.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 289.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 281.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 268.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 254.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 243.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 229.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 228.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 225.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 225.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 224.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 223.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 219.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 219.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 219.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 217.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 209.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 206.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 205.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 204.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 202.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 200.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 197.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 193.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 192.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 190.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 190.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 189.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 189.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 189.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 187.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 186.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 186.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 186.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 184.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 184.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 184.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 180.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 179.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 178.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 178.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 177.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 176.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 175.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 174.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 174.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 173.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 173.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 173.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 171.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 171.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 170.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 167.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 166.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 163.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 162.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 162.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 162.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 162.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 161.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 161.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 160.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 159.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 159.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 158.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 157.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 157.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 155.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 155.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 153.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 152.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 151.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 150.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 150.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 149.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 149.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 147.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 147.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 147.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 144.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 144.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 143.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 142.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 141.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 141.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 141.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 141.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 140.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 140.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 140.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 138.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 138.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 137.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 136.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 136.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 136.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 135.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 133.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 133.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 133.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 133.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 133.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 131.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 130.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 128.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 127.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 127.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 126.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 126.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 125.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 125.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 125.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 124.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 124.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 124.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 123.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 123.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 122.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 121.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 118.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 116.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 115.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 115.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 114.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 113.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 109.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 108.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 108.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 107.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 107.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 107.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 106.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 105.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 105.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 102.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 102.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 96.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 95.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 94.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 94.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 92.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 92.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 92.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 89.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 89.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 88.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 85.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 80.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 79.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 76.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 65.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

89.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 89.9
FF:10151-102I7 76 years, female 89.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.1
Pig sample Sample description nTPM
Amygdala
nTPM: 45.1
Samples: 4

Max nTPM: 65.7
Min nTPM: 35.1
Sample A Female 65.7
Sample B Female 35.1
Sample C Male 38.8
Sample D Male 40.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 243.7
Samples: 4

Max nTPM: 268.2
Min nTPM: 229.7
Sample A Male 237.0
Sample B Male 239.7
Sample C Female 268.2
Sample D Female 229.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.9
69526791 Antisense, RP_050421_01_F05, Mouse strain C57BL/6J (56 days, male) 9.9
81600128 Antisense, RP_080306_04_E09, Mouse strain C57BL/6J (56 days, male) 5.9

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