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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:75.1 nTPM
HPA Brain:70.8 nTPM
GTEx:75.1 nTPM
FANTOM5:186.6 Scaled Tags Per Million
Pig:335.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 64.1
2194 Female, age 79, both hemispheres 73.5
2048 Male, age 55, midline 64.7
2565 Male, age 75, midline 64.4
1981 Female, age 72, midline 59.4
2816 Male, age 47, midline 58.3
Cervical spinal cord, dorsal horn
nTPM: 57.6
2721 Male, age 90, both hemispheres 96.7
2173 Female, age 72, unknown 72.6
2296 Male, age 66, both hemispheres 57.5
1877 Male, age 55, unknown 47.0
2069 Male, age 47, both hemispheres 37.1
2297 Male, age 75, both hemispheres 35.0
Cervical spinal cord, ventral horn
nTPM: 70.8
2820 Female, age 79, both hemispheres 87.8
2098 Female, age 72, unknown 87.0
2068 Male, age 55, unknown 74.3
2295 Male, age 66, both hemispheres 67.2
2809 Male, age 90, both hemispheres 65.0
2480 Male, age 75, both hemispheres 43.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 75.1
Samples: 159

Max nTPM: 255.7
Min nTPM: 9.5
Std nTPM: 39.6
Median nTPM: 61.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 255.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 237.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 234.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 205.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 149.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 148.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 148.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 147.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 145.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 140.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 137.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 136.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 128.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 127.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 126.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 124.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 124.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 122.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 120.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 114.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 112.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 112.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 106.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 106.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 105.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 104.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 103.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 102.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 102.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 100.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 100.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 99.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 99.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 98.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 98.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 97.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 97.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 96.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 95.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 93.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 92.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 91.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 91.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 91.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 90.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 90.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 90.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 89.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 88.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 85.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 84.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 84.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 84.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 84.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 83.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 83.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 83.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 83.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 83.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 79.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 78.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 78.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 78.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 75.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 74.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 74.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 74.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 74.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 72.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 72.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 70.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 68.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 67.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 66.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 65.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 64.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 63.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 63.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 61.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 61.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 61.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 60.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 60.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 60.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 60.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 60.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 60.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 60.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 60.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 59.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 59.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 59.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 59.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 59.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 58.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 57.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 56.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 56.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 56.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 56.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 56.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 55.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 55.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 55.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 55.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 54.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 53.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 53.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 53.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 52.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 52.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 51.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 51.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 49.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 48.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 48.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 48.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 48.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 47.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 47.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 47.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 47.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 47.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 46.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 45.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 45.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 44.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 44.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 43.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 43.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 43.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 42.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 42.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 42.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 41.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 41.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 40.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 40.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 40.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 39.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 38.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 38.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 37.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 37.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 37.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 36.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 36.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 35.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 35.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 33.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 32.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 31.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 29.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 29.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 27.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 27.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 24.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 22.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 9.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

186.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 186.6
FF:10159-103A6 76 years, female 238.3
FF:10181-103D1 60 years, female 134.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

335.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 277.6
Samples: 4

Max nTPM: 365.9
Min nTPM: 196.4
Sample A Female 196.4
Sample B Female 278.0
Sample C Male 365.9
Sample D Male 270.2
Ventral spinal cord
nTPM: 335.3
Samples: 4

Max nTPM: 418.3
Min nTPM: 232.9
Sample A Female 399.4
Sample B Female 232.9
Sample C Male 418.3
Sample D Male 290.4

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