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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:158.9 nTPM
HPA:158.9 nTPM
GTEx:147.9 nTPM
FANTOM5:1579.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA056731
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.9
overview
Male, age 65
Small intestine sample 232
nTPM: 87
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 228.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 248.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 71.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 147.9
Samples: 187

Max nTPM: 575.1
Min nTPM: 6.0
Std nTPM: 120.2
Median nTPM: 108.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 575.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 521.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 518.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 476.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 466.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 446.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 419.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 415.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 414.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 405.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 392.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 354.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 351.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 350.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 347.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 336.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 336.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 335.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 325.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 319.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 317.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 314.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 313.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 298.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 291.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 289.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 286.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 285.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 278.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 276.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 275.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 273.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 272.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 262.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 262.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 258.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 254.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 253.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 248.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 240.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 233.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 232.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 224.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 213.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 213.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 208.1
GTEX-1192X-2526-SM-59868 50-59 years, male 205.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 205.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 204.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 203.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 203.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 197.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 197.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 190.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 187.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 184.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 179.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 172.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 169.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 167.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 162.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 162.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 161.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 160.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 160.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 160.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 157.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 154.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 153.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 152.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 151.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 148.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 147.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 144.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 143.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 139.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 138.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 137.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 134.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 133.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 133.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 131.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 131.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 129.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 129.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 127.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 127.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 124.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 121.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 121.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 118.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 115.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 113.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 108.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 107.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 105.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 104.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 103.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 101.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 100.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 99.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 98.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 98.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 97.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 96.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 95.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 93.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 89.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 88.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 88.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 88.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 87.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 86.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 85.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 84.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 83.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 83.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 83.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 81.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 80.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 79.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 78.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 78.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 75.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 75.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 74.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 74.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 73.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 71.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 69.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 68.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 66.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 66.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 65.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 61.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 61.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 60.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 59.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 58.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 57.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 54.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 52.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 51.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 49.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 48.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 48.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 48.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 48.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 46.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 46.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 45.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 45.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 44.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 42.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 42.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 41.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 40.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 39.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 39.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 39.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 37.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 36.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 35.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 33.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 33.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 30.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 29.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 29.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 28.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 26.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 25.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 22.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 22.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 20.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 19.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 19.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 16.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 16.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 14.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 10.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 10.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 9.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 8.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 8.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 7.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 6.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 6.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1579.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1579.6
FF:10024-101D6 15,40,85 years, mixed 1579.6

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