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ABCB5
HPA
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  • ABCB5
PROTEIN SUMMARY GENE INFORMATION RNA DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ABCB5
Synonyms ABCB5alpha, ABCB5beta, EST422562
Gene descriptioni

Full gene name according to HGNC.

ATP binding cassette subfamily B member 5
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 7
Cytoband p21.1
Chromosome location (bp) 20615667 - 20777038
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000004846 (version 109)
Entrez gene 340273
HGNC HGNC:46
UniProt Q2M3G0 (UniProt - Evidence at protein level)
neXtProt NX_Q2M3G0
GeneCards ABCB5
Antibodypedia ABCB5 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Energy-dependent efflux transporter responsible for decreased drug accumulation in multidrug-resistant cells 1, 2, 3, 4. Specifically present in limbal stem cells, where it plays a key role in corneal development and repair (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Translocase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Differentiation, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

ATP-binding, Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

ABCB5 belongs to the ATP-binding cassette (ABC) transporter superfamily of integral membrane proteins. These proteins participate in ATP-dependent transmembrane transport of structurally diverse molecules ranging from small ions, sugars, and peptides to more complex organic molecules (Chen et al., 2005).[supplied by OMIM, Mar 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ABCB5-201
ENSP00000258738
ENST00000258738
Q2M3G0
[Direct mapping] ATP-binding cassette sub-family B member 5
Show all
Enzymes
   ENZYME proteins
Transporters
   Primary Active Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000166 [nucleotide binding]
GO:0001654 [eye development]
GO:0005524 [ATP binding]
GO:0005886 [plasma membrane]
GO:0008559 [ABC-type xenobiotic transporter activity]
GO:0015562 [efflux transmembrane transporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016887 [ATP hydrolysis activity]
GO:0030154 [cell differentiation]
GO:0042391 [regulation of membrane potential]
GO:0042626 [ATPase-coupled transmembrane transporter activity]
GO:0042908 [xenobiotic transport]
GO:0055085 [transmembrane transport]
GO:0140359 [ABC-type transporter activity]
Show all
812 aa
89.8 kDa
No 5
ABCB5-202
ENSP00000384881
ENST00000404938
Q2M3G0
[Direct mapping] ATP-binding cassette sub-family B member 5
Show all
Enzymes
   ENZYME proteins
Transporters
   Primary Active Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000166 [nucleotide binding]
GO:0001654 [eye development]
GO:0005524 [ATP binding]
GO:0005886 [plasma membrane]
GO:0008559 [ABC-type xenobiotic transporter activity]
GO:0015562 [efflux transmembrane transporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016887 [ATP hydrolysis activity]
GO:0030154 [cell differentiation]
GO:0042391 [regulation of membrane potential]
GO:0042626 [ATPase-coupled transmembrane transporter activity]
GO:0042908 [xenobiotic transport]
GO:0055085 [transmembrane transport]
GO:0140359 [ABC-type transporter activity]
Show all
1257 aa
138.6 kDa
No >9
ABCB5-203
ENSP00000383899
ENST00000406935
Q2M3G0
[Direct mapping] ATP-binding cassette sub-family B member 5
Show all
Enzymes
   ENZYME proteins
Transporters
   Primary Active Transporters
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000166 [nucleotide binding]
GO:0001654 [eye development]
GO:0005524 [ATP binding]
GO:0005886 [plasma membrane]
GO:0008559 [ABC-type xenobiotic transporter activity]
GO:0015562 [efflux transmembrane transporter activity]
GO:0016020 [membrane]
GO:0016887 [ATP hydrolysis activity]
GO:0030154 [cell differentiation]
GO:0042391 [regulation of membrane potential]
GO:0042626 [ATPase-coupled transmembrane transporter activity]
GO:0042908 [xenobiotic transport]
GO:0055085 [transmembrane transport]
GO:0140359 [ABC-type transporter activity]
Show all
126 aa
14.1 kDa
No 0
ABCB5-205
ENSP00000406730
ENST00000443026
Q2M3G0
[Direct mapping] ATP-binding cassette sub-family B member 5
Show all
A0A024RA03
[Target identity:100%; Query identity:100%] HCG38926, isoform CRA_a
Show all
Enzymes
   ENZYME proteins
Transporters
   Primary Active Transporters
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000166 [nucleotide binding]
GO:0001654 [eye development]
GO:0005524 [ATP binding]
GO:0005886 [plasma membrane]
GO:0008559 [ABC-type xenobiotic transporter activity]
GO:0015562 [efflux transmembrane transporter activity]
GO:0016020 [membrane]
GO:0016887 [ATP hydrolysis activity]
GO:0030154 [cell differentiation]
GO:0042391 [regulation of membrane potential]
GO:0042626 [ATPase-coupled transmembrane transporter activity]
GO:0042908 [xenobiotic transport]
GO:0055085 [transmembrane transport]
GO:0140359 [ABC-type transporter activity]
Show all
131 aa
14.7 kDa
No 0

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